Variant report

Variant	rs12898273
Chromosome Location	chr15:50425910-50425911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2414017	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs2414024	1.00[AFR][1000 genomes]
rs2414026	1.00[AFR][1000 genomes]
rs2899455	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4375607	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs4525435	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs4570773	0.80[AFR][1000 genomes]
rs4774555	1.00[AFR][1000 genomes]
rs4775853	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4775856	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4775857	1.00[YRI][hapmap]
rs4775859	1.00[YRI][hapmap]
rs6493404	1.00[AFR][1000 genomes]
rs6493405	1.00[AFR][1000 genomes]
rs6493406	1.00[AFR][1000 genomes]
rs7168389	0.80[AFR][1000 genomes]
rs7170837	1.00[AFR][1000 genomes]
rs8029368	1.00[AFR][1000 genomes]
rs8036504	0.86[AFR][1000 genomes]
rs8036936	1.00[AFR][1000 genomes]
rs8038060	1.00[AFR][1000 genomes]
rs9302152	1.00[AFR][1000 genomes]
rs9302153	1.00[AFR][1000 genomes]
rs933853	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9920425	1.00[AFR][1000 genomes]
rs9920525	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50418600-50427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:50420800-50426000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:50421000-50426000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:50423600-50426400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr15:50424200-50429000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr15:50425200-50429000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:50425800-50426600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:50425800-50428800	Enhancers	Hela-S3	cervix
9	chr15:50425800-50430800	Enhancers	NHDF-Ad	bronchial

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