Variant report

Variant	rs4375607
Chromosome Location	chr15:50401981-50401982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12898273	0.80[AFR][1000 genomes]
rs2414017	0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs2414024	0.80[AFR][1000 genomes]
rs2414026	0.80[AFR][1000 genomes]
rs2899455	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4525435	0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs4570773	1.00[AFR][1000 genomes]
rs4774555	0.80[AFR][1000 genomes]
rs4775853	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4775856	1.00[YRI][hapmap]
rs4775857	1.00[YRI][hapmap]
rs4775859	1.00[YRI][hapmap]
rs6493404	0.80[AFR][1000 genomes]
rs6493405	0.80[AFR][1000 genomes]
rs6493406	0.80[AFR][1000 genomes]
rs7168389	1.00[AFR][1000 genomes]
rs7170837	0.80[AFR][1000 genomes]
rs8029368	0.80[AFR][1000 genomes]
rs8036936	0.80[AFR][1000 genomes]
rs8038060	0.80[AFR][1000 genomes]
rs9302152	0.80[AFR][1000 genomes]
rs9302153	0.80[AFR][1000 genomes]
rs933853	1.00[YRI][hapmap]
rs9920425	0.80[AFR][1000 genomes]
rs9920525	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50398800-50403200	Enhancers	Primary T cells from cord blood	blood
2	chr15:50399200-50403000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr15:50399200-50407200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr15:50399400-50402000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr15:50399400-50402000	Enhancers	Fetal Thymus	thymus
6	chr15:50399400-50402200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:50399400-50402200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:50399400-50403800	Enhancers	Thymus	Thymus
9	chr15:50399800-50407800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:50400000-50402000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr15:50400000-50402400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:50400200-50402000	Enhancers	Dnd41	blood
13	chr15:50400400-50402600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:50400600-50402000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr15:50400600-50402000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr15:50400600-50402000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:50400800-50402200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr15:50400800-50402800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr15:50400800-50403600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:50401000-50404600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:50401200-50402000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:50401200-50402000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr15:50401200-50402000	Enhancers	HMEC	breast
24	chr15:50401200-50402000	Enhancers	NHEK	skin
25	chr15:50401200-50402000	Enhancers	Osteobl	bone
26	chr15:50401200-50402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:50401200-50402200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:50401200-50402200	Enhancers	Liver	Liver
29	chr15:50401400-50402600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr15:50401400-50403800	Weak transcription	K562	blood
31	chr15:50401400-50404800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:50401400-50405000	Weak transcription	Spleen	Spleen
33	chr15:50401600-50402000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr15:50401600-50402000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr15:50401600-50402000	Enhancers	NHDF-Ad	bronchial
36	chr15:50401600-50402200	Enhancers	GM12878-XiMat	blood
37	chr15:50401800-50402600	Weak transcription	Primary B cells from cord blood	blood
38	chr15:50401800-50402600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:50401800-50403800	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:50401800-50404400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links