Variant report

Variant	rs12898639
Chromosome Location	chr15:35196492-35196493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35195184..35198331-chr15:35198423..35200783,3	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10152246	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10519967	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633307	0.96[ASN][1000 genomes]
rs11635485	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11636350	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11852957	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11855784	0.93[ASN][1000 genomes]
rs11857217	0.91[ASN][1000 genomes]
rs11858044	0.96[ASN][1000 genomes]
rs12593379	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12593603	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12593818	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595318	0.90[ASN][1000 genomes]
rs12899377	0.96[ASN][1000 genomes]
rs12901028	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901394	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12901457	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12901466	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12901794	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12901991	0.96[ASN][1000 genomes]
rs12902633	0.90[ASN][1000 genomes]
rs12904279	0.90[ASN][1000 genomes]
rs12915053	0.83[EUR][1000 genomes]
rs12915493	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917386	0.93[ASN][1000 genomes]
rs12917597	0.93[ASN][1000 genomes]
rs1376784	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16959966	0.81[ASN][1000 genomes]
rs2044920	0.95[ASN][1000 genomes]
rs2060810	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2060812	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2123048	0.96[ASN][1000 genomes]
rs2290320	0.93[ASN][1000 genomes]
rs2305411	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2339746	0.96[ASN][1000 genomes]
rs28498500	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28715915	0.82[EUR][1000 genomes]
rs36067547	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3743121	0.85[ASN][1000 genomes]
rs3816447	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3848167	0.93[ASN][1000 genomes]
rs4923817	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4923818	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4923845	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924324	0.93[ASN][1000 genomes]
rs4924325	0.93[ASN][1000 genomes]
rs4924339	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4924344	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924355	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4924357	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4924369	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495723	0.96[ASN][1000 genomes]
rs6495724	0.96[ASN][1000 genomes]
rs6495726	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495728	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6495729	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7164977	0.96[ASN][1000 genomes]
rs7165835	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167892	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170280	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7170737	0.91[ASN][1000 genomes]
rs7171808	0.92[ASN][1000 genomes]
rs7172507	0.90[EUR][1000 genomes]
rs7177962	0.93[ASN][1000 genomes]
rs7182492	0.96[ASN][1000 genomes]
rs7497306	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8024212	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8025770	0.94[ASN][1000 genomes]
rs8029192	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8031583	0.96[ASN][1000 genomes]
rs8031677	0.96[ASN][1000 genomes]
rs8031861	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8036690	0.96[ASN][1000 genomes]
rs8040551	0.91[ASN][1000 genomes]
rs959478	0.96[ASN][1000 genomes]
rs963425	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9672656	0.84[ASN][1000 genomes]
rs9806487	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9920918	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35145200-35198200	Weak transcription	Colonic Mucosa	Colon
3	chr15:35185200-35205200	Weak transcription	Stomach Mucosa	stomach
4	chr15:35186000-35196600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:35186000-35196600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:35186000-35197600	Weak transcription	Left Ventricle	heart
7	chr15:35186000-35198000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:35186000-35198000	Weak transcription	Spleen	Spleen
9	chr15:35186000-35198400	Weak transcription	Aorta	Aorta
10	chr15:35186000-35198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:35186000-35199600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:35186000-35204200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:35186000-35206400	Weak transcription	Right Ventricle	heart
14	chr15:35186000-35206600	Weak transcription	Small Intestine	intestine
15	chr15:35186000-35212400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:35186000-35212600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:35186000-35213000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:35186000-35220000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:35186000-35220000	Weak transcription	Pancreas	Pancrea
20	chr15:35186000-35223200	Weak transcription	Gastric	stomach
21	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
22	chr15:35186200-35198000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:35186200-35198200	Weak transcription	Esophagus	oesophagus
24	chr15:35186200-35198400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:35186200-35202200	Weak transcription	NHEK	skin
26	chr15:35186200-35212000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:35186200-35212400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:35186200-35212400	Strong transcription	Liver	Liver
29	chr15:35186400-35201000	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:35186400-35205400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:35186600-35198800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:35186600-35204000	Weak transcription	NHLF	lung
34	chr15:35186600-35206000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr15:35186600-35212200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:35186600-35212200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:35186600-35212400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:35187200-35196600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:35187200-35204000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:35187200-35204200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:35187200-35212000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:35187400-35212000	Strong transcription	Adipose Nuclei	Adipose
43	chr15:35187800-35204200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:35188200-35199000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:35189200-35199600	Weak transcription	Fetal Kidney	kidney
46	chr15:35190000-35198200	Weak transcription	Brain Anterior Caudate	brain
47	chr15:35190000-35198600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr15:35190200-35197600	Weak transcription	Fetal Brain Female	brain
49	chr15:35190200-35198600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:35190400-35198200	Weak transcription	Fetal Muscle Leg	muscle

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