Variant report

Variant	rs2290320
Chromosome Location	chr15:35222318-35222319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10152246	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs10519967	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11073076	0.80[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11633307	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11635485	0.83[JPT][hapmap]
rs11636350	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs11852957	0.89[ASN][1000 genomes]
rs11855784	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857217	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11858044	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12439825	0.87[CHD][hapmap]
rs12442905	0.80[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap]
rs12593379	0.90[ASN][1000 genomes]
rs12593818	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12595318	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12708534	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12898639	0.93[ASN][1000 genomes]
rs12899377	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901028	0.93[ASN][1000 genomes]
rs12901457	0.93[ASN][1000 genomes]
rs12901991	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12902633	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12904279	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12915493	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs12917386	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917597	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1376784	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs16959966	0.81[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2044920	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2060809	0.80[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs2060810	0.89[CHD][hapmap]
rs2060811	0.94[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2060812	0.88[JPT][hapmap]
rs2123048	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2305411	0.83[JPT][hapmap]
rs2339746	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743121	0.80[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3816447	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs3848167	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4513050	0.94[CEU][hapmap];0.80[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4569214	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4614679	0.87[CHD][hapmap]
rs4923817	0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4923818	0.87[ASN][1000 genomes]
rs4923845	0.83[JPT][hapmap]
rs4923849	0.89[CHD][hapmap]
rs4924324	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4924325	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4924339	0.90[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs4924344	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs4924355	0.93[ASN][1000 genomes]
rs4924357	0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4924369	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6495723	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495724	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495726	0.89[ASN][1000 genomes]
rs6495729	0.83[JPT][hapmap]
rs6495730	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs7164070	1.00[ASW][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7164151	0.89[CHD][hapmap]
rs7164169	0.80[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs7164266	0.80[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap]
rs7164977	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165835	0.89[ASN][1000 genomes]
rs7167892	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs7170737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7171808	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177337	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7177962	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7179833	0.94[CEU][hapmap];0.80[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7181836	0.88[AMR][1000 genomes]
rs7182356	0.82[ASW][hapmap];0.88[CEU][hapmap];0.80[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7182492	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7497306	0.87[ASN][1000 genomes]
rs8024212	0.81[ASN][1000 genomes]
rs8025770	1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029930	0.82[GIH][hapmap]
rs8031583	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8031677	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8036690	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8037200	0.82[GIH][hapmap]
rs8037610	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs8040551	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs959478	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs963425	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs9672656	0.82[ASN][1000 genomes]
rs9806487	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs9920529	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9920918	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35186000-35223200	Weak transcription	Gastric	stomach
2	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
3	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:35197600-35238800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
6	chr15:35199000-35223200	Weak transcription	Spleen	Spleen
7	chr15:35204600-35223600	Weak transcription	Psoas Muscle	Psoas
8	chr15:35204600-35227000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:35207000-35223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:35207000-35234600	Weak transcription	Stomach Mucosa	stomach
11	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
12	chr15:35207400-35223600	Weak transcription	Colonic Mucosa	Colon
13	chr15:35207400-35239800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:35207600-35223800	Weak transcription	Right Ventricle	heart
15	chr15:35208200-35223200	Weak transcription	Lung	lung
16	chr15:35209800-35232200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:35210600-35223200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:35211000-35224000	Weak transcription	NHLF	lung
19	chr15:35211000-35231800	Weak transcription	Brain Angular Gyrus	brain
20	chr15:35212000-35223600	Weak transcription	HepG2	liver
21	chr15:35212200-35223600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:35213800-35235400	Strong transcription	Liver	Liver
23	chr15:35213800-35238800	Strong transcription	Placenta	Placenta
24	chr15:35213800-35238800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:35214000-35238200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:35214200-35237600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:35214200-35238000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:35214200-35238200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:35215000-35223200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:35215600-35223200	Weak transcription	Fetal Intestine Small	intestine
31	chr15:35215600-35227800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:35215800-35238800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:35216200-35228200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:35216600-35226400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:35216800-35236600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:35217000-35228600	Strong transcription	HSMM	muscle
37	chr15:35217000-35237000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:35217000-35238600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr15:35217200-35234600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:35217200-35238200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:35217400-35226000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:35217400-35226200	Strong transcription	Primary T cells from cord blood	blood
43	chr15:35217400-35226400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:35217400-35227000	Strong transcription	Dnd41	blood
45	chr15:35217400-35233200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:35217400-35237000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr15:35217400-35238200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr15:35217400-35238400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:35217400-35238400	Strong transcription	Adipose Nuclei	Adipose
50	chr15:35217600-35233000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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