Variant report

Variant	rs8037200
Chromosome Location	chr15:35287753-35287754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35278794..35283582-chr15:35283942..35288956,6	MCF-7	breast:
2	chr15:35286243..35288902-chr15:35289787..35292122,3	K562	blood:

Variant related genes	Relation type
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10438394	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10444812	0.94[ASN][1000 genomes]
rs11855784	0.85[GIH][hapmap]
rs11857217	0.89[GIH][hapmap]
rs12185138	0.92[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12440456	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441126	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12442577	0.93[ASN][1000 genomes]
rs12442905	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1964518	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2290320	0.82[GIH][hapmap]
rs2339747	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28433224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28441514	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35356959	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35799802	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3848167	0.89[GIH][hapmap]
rs4513050	0.89[GIH][hapmap]
rs4924325	0.89[GIH][hapmap]
rs4924435	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4924440	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4924463	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495724	0.89[GIH][hapmap]
rs7179833	0.89[GIH][hapmap]
rs7182356	0.89[GIH][hapmap]
rs8025770	0.89[GIH][hapmap]
rs8029930	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8040551	0.96[GIH][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35281200-35289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:35281400-35299000	Weak transcription	Right Atrium	heart
3	chr15:35285200-35287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:35285200-35287800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:35285800-35288200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:35285800-35288200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:35286200-35288400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:35286400-35288200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr15:35286400-35288200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:35286400-35288400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr15:35286400-35288400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:35286600-35288400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:35286800-35288400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr15:35286800-35292800	Weak transcription	K562	blood
15	chr15:35287200-35292800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:35287400-35287800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:35287400-35288400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:35287600-35288200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr15:35287600-35292000	Weak transcription	HMEC	breast
20	chr15:35287600-35293000	Weak transcription	NHEK	skin

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