Variant report

Variant	rs28441514
Chromosome Location	chr15:35290946-35290947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10438394	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10444812	0.90[ASN][1000 genomes]
rs12185138	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12440456	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12441126	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12442577	0.87[ASN][1000 genomes]
rs12442905	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1964518	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2339747	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28433224	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35356959	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35799802	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4924435	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4924440	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924463	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8029930	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8037200	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35281400-35299000	Weak transcription	Right Atrium	heart
2	chr15:35286800-35292800	Weak transcription	K562	blood
3	chr15:35287200-35292800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:35287600-35292000	Weak transcription	HMEC	breast
5	chr15:35287600-35293000	Weak transcription	NHEK	skin
6	chr15:35288200-35292800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:35288200-35292800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:35288200-35292800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:35288200-35297200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:35288400-35292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:35288400-35292800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:35288400-35292800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:35290600-35291200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links