Variant report

Variant	rs2339747
Chromosome Location	chr15:35306104-35306105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35280742..35283460-chr15:35305022..35307533,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10438394	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11857217	0.82[GIH][hapmap]
rs12185138	0.87[CHD][hapmap];0.89[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12440456	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12441126	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12442905	0.92[GIH][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1964518	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28433224	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28441514	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35356959	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35799802	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3848167	0.82[GIH][hapmap]
rs4513050	0.82[GIH][hapmap]
rs4924325	0.82[GIH][hapmap]
rs4924435	0.90[AMR][1000 genomes]
rs4924440	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4924463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495724	0.82[GIH][hapmap]
rs7179833	0.82[GIH][hapmap]
rs7182356	0.82[GIH][hapmap]
rs8025770	0.82[GIH][hapmap]
rs8029930	0.81[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8037200	0.88[CHD][hapmap];0.92[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8040551	0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35299400-35311400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:35305400-35307800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:35305600-35306200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:35305600-35306200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:35305600-35306200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr15:35305600-35306400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:35305600-35307800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:35305600-35308000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:35305800-35306200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:35305800-35306200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:35305800-35306200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:35305800-35306200	Enhancers	HSMM	muscle
13	chr15:35305800-35306200	Enhancers	NHEK	skin
14	chr15:35305800-35306200	Enhancers	Osteobl	bone
15	chr15:35305800-35306400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:35305800-35306800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:35306000-35306200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr15:35306000-35306200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:35306000-35306200	Enhancers	HSMMtube	muscle
20	chr15:35306000-35306600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr15:35306000-35307000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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