Variant report

Variant	rs4923849
Chromosome Location	chr15:35273620-35273621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35269375..35271002-chr15:35273264..35275712,2	MCF-7	breast:
2	chr15:35272114..35275594-chr15:35276542..35279290,3	MCF-7	breast:
3	chr15:35267358..35269882-chr15:35273203..35276166,3	K562	blood:
4	chr15:35273274..35276685-chr15:35278629..35280657,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212768	Chromatin interaction
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10438394	0.96[ASN][1000 genomes]
rs10444812	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10519967	0.89[CHD][hapmap]
rs11073076	0.83[ASN][1000 genomes]
rs11629721	0.83[ASN][1000 genomes]
rs11635485	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11636350	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11855784	0.89[CHD][hapmap]
rs11857217	0.84[CHD][hapmap]
rs12439825	1.00[CHD][hapmap];0.94[MKK][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12441204	0.84[CHD][hapmap]
rs12442577	0.80[EUR][1000 genomes]
rs12442905	1.00[CHD][hapmap];0.96[ASN][1000 genomes]
rs12591197	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12593603	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593818	0.89[CHD][hapmap]
rs12708534	0.83[ASN][1000 genomes]
rs12901394	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12901466	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12901794	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12915493	0.89[CHD][hapmap]
rs1376784	0.89[CHD][hapmap]
rs16959966	0.81[CHD][hapmap]
rs2060809	0.94[CHD][hapmap];0.85[ASN][1000 genomes]
rs2060810	0.92[CHD][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2060811	0.85[ASN][1000 genomes]
rs2060812	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2290320	0.89[CHD][hapmap]
rs2305411	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28498500	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36067547	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3743121	0.89[CHD][hapmap]
rs3816447	0.91[ASW][hapmap];0.89[CHD][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.81[AFR][1000 genomes]
rs3848167	0.89[CHD][hapmap]
rs4513050	0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs4923845	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4924325	0.89[CHD][hapmap]
rs4924344	0.89[CHD][hapmap]
rs4924369	0.89[CHD][hapmap]
rs6495724	0.89[CHD][hapmap]
rs6495728	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495729	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495730	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7164151	1.00[ASW][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164169	0.94[CHD][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7164266	0.94[CHD][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7170280	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7172507	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7177337	0.85[ASN][1000 genomes]
rs7179205	0.85[ASN][1000 genomes]
rs7179833	0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs7181836	0.86[ASN][1000 genomes]
rs7182356	0.94[CHD][hapmap];0.88[ASN][1000 genomes]
rs8025770	0.89[CHD][hapmap]
rs8031861	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8033077	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8037610	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8040551	0.89[CHD][hapmap]
rs9920529	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv827295	chr15:35271409-35275645	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35262000-35276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:35262000-35278600	Weak transcription	Gastric	stomach
3	chr15:35262400-35274600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:35262400-35274600	Weak transcription	NHLF	lung
5	chr15:35262400-35278600	Weak transcription	HSMMtube	muscle
6	chr15:35262400-35279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:35262400-35279000	Weak transcription	Aorta	Aorta
8	chr15:35262600-35273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:35262600-35273800	Weak transcription	Fetal Lung	lung
10	chr15:35262600-35273800	Weak transcription	NHDF-Ad	bronchial
11	chr15:35262600-35274200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:35262600-35274400	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:35262600-35274400	Weak transcription	NH-A	brain
14	chr15:35262600-35274600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:35262600-35274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:35262600-35274600	Weak transcription	Left Ventricle	heart
17	chr15:35262600-35274800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:35262600-35274800	Weak transcription	Fetal Kidney	kidney
19	chr15:35262600-35274800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:35262600-35274800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:35262600-35275000	Weak transcription	Osteobl	bone
22	chr15:35262600-35276200	Weak transcription	Primary B cells from cord blood	blood
23	chr15:35262600-35276200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:35262600-35276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:35262600-35276400	Weak transcription	HepG2	liver
26	chr15:35262600-35276600	Weak transcription	Lung	lung
27	chr15:35262600-35277000	Weak transcription	Fetal Intestine Small	intestine
28	chr15:35262600-35277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:35262600-35277200	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:35262600-35278200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr15:35262600-35278600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:35262600-35278600	Weak transcription	Right Ventricle	heart
33	chr15:35262600-35278600	Weak transcription	Thymus	Thymus
34	chr15:35262600-35278800	Weak transcription	Esophagus	oesophagus
35	chr15:35262600-35278800	Weak transcription	Ovary	ovary
36	chr15:35262800-35273800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:35262800-35273800	Weak transcription	Psoas Muscle	Psoas
38	chr15:35262800-35274400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:35262800-35277200	Weak transcription	Pancreas	Pancrea
40	chr15:35262800-35277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:35266200-35276800	Weak transcription	Fetal Heart	heart
42	chr15:35267200-35277800	Weak transcription	Spleen	Spleen
43	chr15:35267600-35278600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:35268600-35278400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:35269000-35273800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr15:35269400-35274800	Weak transcription	Brain Angular Gyrus	brain
47	chr15:35269400-35275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:35269600-35273800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:35269600-35278600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:35270000-35278400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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