The 2.0 version of rSNPBase

Variant report

Variant rs12898655
Chromosome Location chr15:52719614-52719615
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52644600-52730200 Weak transcription Esophagus oesophagus
2 chr15:52665200-52720600 Weak transcription Pancreas Pancrea
3 chr15:52668800-52730400 Weak transcription Aorta Aorta
4 chr15:52673800-52730200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr15:52676400-52721400 Weak transcription Gastric stomach
6 chr15:52677000-52730000 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr15:52679800-52729600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr15:52679800-52740000 Weak transcription Spleen Spleen
9 chr15:52680600-52719800 Weak transcription NH-A brain
10 chr15:52680800-52730000 Weak transcription Brain Angular Gyrus brain
11 chr15:52680800-52740200 Weak transcription Thymus Thymus
12 chr15:52684000-52719800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr15:52684800-52719800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr15:52684800-52730000 Weak transcription Brain Hippocampus Middle brain
15 chr15:52685400-52730000 Weak transcription Brain Cingulate Gyrus brain
16 chr15:52689600-52730200 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr15:52689600-52730200 Weak transcription Left Ventricle heart
18 chr15:52689600-52730400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr15:52696000-52730200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr15:52696200-52719800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr15:52697200-52720000 Weak transcription Ovary ovary
22 chr15:52697200-52730000 Weak transcription Brain Inferior Temporal Lobe brain
23 chr15:52697200-52730400 Weak transcription Stomach Smooth Muscle stomach
24 chr15:52697200-52738600 Weak transcription Fetal Brain Female brain
25 chr15:52697400-52720000 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr15:52697400-52730400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr15:52697600-52720600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr15:52698600-52720400 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr15:52702400-52737600 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr15:52702600-52719800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr15:52702600-52730000 Weak transcription Brain Anterior Caudate brain
32 chr15:52702600-52730600 Weak transcription Colon Smooth Muscle Colon
33 chr15:52707200-52719800 Weak transcription HSMMtube muscle
34 chr15:52708800-52720400 Weak transcription Primary T cells fromperipheralblood blood
35 chr15:52710200-52719800 Weak transcription HMEC breast
36 chr15:52710400-52719800 Weak transcription NHEK skin
37 chr15:52710800-52732200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr15:52711400-52719800 Weak transcription NHDF-Ad bronchial
39 chr15:52711600-52732000 Weak transcription Brain Germinal Matrix brain
40 chr15:52712800-52719800 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr15:52713000-52719800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr15:52713000-52720000 Weak transcription Primary hematopoietic stem cells blood
43 chr15:52713400-52719800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr15:52713600-52721000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr15:52713600-52729800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr15:52713800-52720000 Weak transcription GM12878-XiMat blood
47 chr15:52714800-52722600 Strong transcription Monocytes-CD14+_RO01746 blood
48 chr15:52715400-52719800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr15:52715400-52719800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr15:52715600-52726400 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015