Variant report
| Variant | rs12901280 |
|---|---|
| Chromosome Location | chr15:82298783-82298784 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000183496 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12899461 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12916310 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12916537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1503063 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1503064 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1503066 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4563005 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7177796 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8035454 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833067 | chr15:82234980-82450485 | Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422504 | chr15:82293064-82426400 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12901280 | RP11-276M12.1 | cis | lung | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
