Variant report

Variant	rs1503066
Chromosome Location	chr15:82286003-82286004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11073032	0.94[CEU][hapmap]
rs11856043	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11857577	0.92[EUR][1000 genomes]
rs12592587	0.92[EUR][1000 genomes]
rs12594239	0.84[EUR][1000 genomes]
rs12899461	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12901280	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12905306	0.93[EUR][1000 genomes]
rs12914166	0.91[EUR][1000 genomes]
rs12916310	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12916537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12917010	0.92[EUR][1000 genomes]
rs1503063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34268394	0.85[EUR][1000 genomes]
rs35411469	0.92[EUR][1000 genomes]
rs4563005	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172661	0.88[EUR][1000 genomes]
rs7175261	0.84[AMR][1000 genomes]
rs7177796	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7342622	0.91[EUR][1000 genomes]
rs8024021	0.88[EUR][1000 genomes]
rs8030818	0.92[EUR][1000 genomes]
rs8032116	0.88[EUR][1000 genomes]
rs8033692	0.92[EUR][1000 genomes]
rs8035454	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8038252	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1503066	RP11-276M12.1	cis	lung	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82273800-82287400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:82274200-82287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:82284400-82287400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:82284600-82287400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:82284600-82287400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:82284600-82287400	Weak transcription	Pancreas	Pancrea
7	chr15:82284600-82287600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:82284800-82287200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links