Variant report

Variant	rs12901506
Chromosome Location	chr15:33929755-33929756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16957026	0.85[YRI][hapmap]
rs2229117	0.93[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2229118	0.95[YRI][hapmap]
rs2291730	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28576933	0.83[AFR][1000 genomes]
rs34638660	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35203574	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35242916	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36020093	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816940	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4238567	0.86[CHB][hapmap]
rs4780137	0.93[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4780138	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71462874	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71462875	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33913000-33932200	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33920400-33931200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:33920800-33931000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:33922200-33938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:33924200-33932000	Weak transcription	Brain Substantia Nigra	brain
8	chr15:33924400-33931000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:33924400-33936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:33925400-33931600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:33925800-33952600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:33926600-33930400	Weak transcription	Fetal Stomach	stomach
13	chr15:33927800-33931600	Weak transcription	Brain Germinal Matrix	brain
14	chr15:33928400-33931000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:33928800-33930000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:33928800-33930400	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:33928800-33931400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:33928800-33932000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:33928800-33936400	Weak transcription	Aorta	Aorta
20	chr15:33929000-33930400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:33929600-33931400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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