Variant report

Variant	rs3816940
Chromosome Location	chr15:33925062-33925063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12901506	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2229117	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229118	0.85[YRI][hapmap]
rs2291730	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34638660	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203574	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35242916	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4238567	0.86[JPT][hapmap]
rs4780137	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4780138	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462874	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462875	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33913000-33932200	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:33915000-33959400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33915400-33925800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:33915400-33925800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:33920200-33927400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:33920400-33931200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr15:33920800-33931000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:33921000-33925600	Weak transcription	Ovary	ovary
9	chr15:33921200-33928800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:33921200-33928800	Strong transcription	Stomach Smooth Muscle	stomach
11	chr15:33922200-33938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:33922800-33928800	Strong transcription	Fetal Muscle Leg	muscle
13	chr15:33923200-33929000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr15:33923200-33955600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:33923400-33925800	Strong transcription	Brain Anterior Caudate	brain
16	chr15:33923600-33929600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:33924200-33932000	Weak transcription	Brain Substantia Nigra	brain
18	chr15:33924400-33925400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:33924400-33925600	Weak transcription	Aorta	Aorta
20	chr15:33924400-33931000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:33924400-33936400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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