Variant report

Variant	rs12903726
Chromosome Location	chr15:42954739-42954740
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34015644	1.00[AMR][1000 genomes]
rs67266935	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
3	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:42923000-42958200	Weak transcription	Hela-S3	cervix
5	chr15:42925200-42966000	Weak transcription	NH-A	brain
6	chr15:42925200-42966800	Weak transcription	NHLF	lung
7	chr15:42925600-42961000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:42930600-42964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:42930800-42957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:42931200-42963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:42931400-42955800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:42931600-42955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:42931800-42955000	Weak transcription	Fetal Lung	lung
16	chr15:42931800-42955000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:42931800-42955600	Weak transcription	Lung	lung
18	chr15:42931800-42957200	Weak transcription	Primary B cells from cord blood	blood
19	chr15:42931800-42958200	Weak transcription	Brain Angular Gyrus	brain
20	chr15:42931800-42968000	Weak transcription	HSMM	muscle
21	chr15:42932000-42958400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:42932200-42966200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:42932400-42960000	Weak transcription	Primary T cells from cord blood	blood
24	chr15:42932600-42955400	Weak transcription	Aorta	Aorta
25	chr15:42939200-42961200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:42940400-42967800	Weak transcription	HepG2	liver
27	chr15:42942800-42955000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:42942800-42955400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:42942800-42955600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:42942800-42955800	Weak transcription	Brain Substantia Nigra	brain
31	chr15:42942800-42967200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:42942800-42973600	Weak transcription	Psoas Muscle	Psoas
33	chr15:42943000-42957600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:42945000-42955000	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:42945000-42955400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:42945200-42955000	Weak transcription	Left Ventricle	heart
37	chr15:42945200-42955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:42945200-42973400	Weak transcription	Thymus	Thymus
39	chr15:42945400-42954800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:42945400-42957000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:42945800-42960800	Weak transcription	GM12878-XiMat	blood
42	chr15:42947000-42955200	Weak transcription	NHDF-Ad	bronchial
43	chr15:42947000-42964400	Weak transcription	Spleen	Spleen
44	chr15:42948600-42961200	Weak transcription	HSMMtube	muscle
45	chr15:42949600-42955000	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:42949800-42999200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:42950000-42955400	Weak transcription	Brain Anterior Caudate	brain
48	chr15:42950000-42969400	Weak transcription	K562	blood
49	chr15:42950200-42963200	Weak transcription	Fetal Heart	heart
50	chr15:42950400-42990200	Strong transcription	Fetal Stomach	stomach

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