Variant report

Variant	rs12903941
Chromosome Location	chr15:73554544-73554545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11072404	0.82[JPT][hapmap]
rs12592184	0.82[JPT][hapmap]
rs12902966	0.87[ASN][1000 genomes]
rs1320241	0.82[JPT][hapmap]
rs1620369	0.82[JPT][hapmap]
rs1621216	0.82[JPT][hapmap]
rs1631796	0.82[JPT][hapmap]
rs1678246	0.82[JPT][hapmap]
rs1678247	0.82[JPT][hapmap]
rs16957640	0.85[GIH][hapmap];0.82[JPT][hapmap]
rs2619257	0.82[JPT][hapmap]
rs2623991	0.82[JPT][hapmap]
rs2660828	0.82[JPT][hapmap]
rs2680345	0.82[JPT][hapmap]
rs4564531	0.82[JPT][hapmap]
rs4570800	0.82[JPT][hapmap]
rs471192	0.86[CHD][hapmap]
rs549377	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs6495056	0.85[GIH][hapmap];0.82[JPT][hapmap]
rs7163504	0.90[GIH][hapmap]
rs7170328	0.82[JPT][hapmap]
rs8033192	0.82[JPT][hapmap]
rs8037761	0.82[JPT][hapmap]
rs8041219	0.82[JPT][hapmap]
rs9806271	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73536800-73562400	Weak transcription	A549	lung
11	chr15:73537600-73572200	Weak transcription	Fetal Heart	heart
12	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:73538200-73562600	Strong transcription	Fetal Intestine Large	intestine
14	chr15:73540000-73565400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:73540800-73562400	Weak transcription	HepG2	liver
17	chr15:73543000-73567400	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:73543400-73562800	Weak transcription	Stomach Mucosa	stomach
19	chr15:73543800-73555400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:73544000-73557800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:73544200-73555400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:73544600-73555400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:73544800-73555400	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:73545600-73555600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:73546000-73555000	Strong transcription	Liver	Liver
27	chr15:73546200-73556600	Strong transcription	Duodenum Mucosa	Duodenum
28	chr15:73546800-73555400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:73546800-73555400	Strong transcription	Brain Cingulate Gyrus	brain
30	chr15:73546800-73563000	Weak transcription	Right Ventricle	heart
31	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
33	chr15:73547000-73555400	Strong transcription	Fetal Kidney	kidney
34	chr15:73547000-73559600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:73547600-73576600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:73548200-73558200	Weak transcription	Fetal Brain Male	brain
38	chr15:73548200-73575000	Weak transcription	Gastric	stomach
39	chr15:73548200-73575200	Weak transcription	Pancreas	Pancrea
40	chr15:73548200-73575600	Weak transcription	Esophagus	oesophagus
41	chr15:73548600-73561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:73548600-73562400	Weak transcription	Aorta	Aorta
43	chr15:73549200-73562600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:73549200-73565400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:73549200-73565400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:73549200-73575200	Weak transcription	Brain Germinal Matrix	brain
47	chr15:73549200-73575200	Weak transcription	Lung	lung
48	chr15:73550200-73555400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:73550800-73555200	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:73550800-73581400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links