Variant report

Variant	rs9806271
Chromosome Location	chr15:73466605-73466606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11072404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12903941	0.82[JPT][hapmap]
rs1320241	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1479336	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1620369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1621216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1631796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1678246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1678247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16957640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1871387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2623989	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2623991	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2623992	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2623999	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2660822	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2660825	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2660828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2680336	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2680337	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2680342	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2680345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2680346	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28462360	0.87[ASN][1000 genomes]
rs4564531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4570800	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471192	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4776627	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4776629	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs481579	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs484515	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs484544	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs489873	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs494493	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs497539	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs499098	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs513744	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs525587	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs529004	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs542259	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs549377	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs553238	0.90[EUR][1000 genomes]
rs55787640	0.92[EUR][1000 genomes]
rs561929	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56402186	0.84[ASN][1000 genomes]
rs56753901	0.92[ASN][1000 genomes]
rs58859253	0.90[EUR][1000 genomes]
rs59537860	0.90[EUR][1000 genomes]
rs60685845	0.89[ASN][1000 genomes]
rs6495056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs66466251	0.85[ASN][1000 genomes]
rs66881913	0.92[EUR][1000 genomes]
rs66931013	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67178516	0.91[ASN][1000 genomes]
rs67928653	0.92[ASN][1000 genomes]
rs67999476	0.82[AMR][1000 genomes]
rs68053508	0.93[EUR][1000 genomes]
rs68123262	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7163504	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs7168651	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7168829	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7170328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7177002	0.92[ASN][1000 genomes]
rs7177629	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs72739445	0.85[ASN][1000 genomes]
rs8033192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8037761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8039308	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8041219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv527236	chr15:73421239-73469535	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73401400-73480200	Weak transcription	Right Ventricle	heart
2	chr15:73447200-73470000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:73448000-73469000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:73449200-73469000	Weak transcription	Ovary	ovary
5	chr15:73450000-73475400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:73450000-73477400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:73452200-73470000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:73454600-73483000	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:73454800-73471600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:73455000-73473800	Weak transcription	Fetal Stomach	stomach
11	chr15:73455200-73500400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:73457600-73470600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:73458600-73469000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:73458600-73469000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:73458600-73473200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:73458600-73478000	Weak transcription	Colonic Mucosa	Colon
17	chr15:73458800-73469000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:73459000-73470000	Weak transcription	Liver	Liver
19	chr15:73459000-73470400	Weak transcription	Fetal Lung	lung
20	chr15:73459000-73470600	Weak transcription	Fetal Kidney	kidney
21	chr15:73459000-73472400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:73459000-73482800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:73459200-73467800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:73459200-73469000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:73459200-73471600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:73459200-73473800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:73459200-73473800	Weak transcription	Fetal Intestine Small	intestine
28	chr15:73459400-73473400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:73460000-73469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:73460800-73472400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr15:73461000-73467400	Weak transcription	Right Atrium	heart
32	chr15:73461000-73469000	Weak transcription	Fetal Intestine Large	intestine
33	chr15:73461800-73466800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:73462000-73466800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:73462000-73467200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:73462000-73467600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:73462400-73467400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:73462400-73473800	Weak transcription	Fetal Brain Female	brain
39	chr15:73466200-73473800	Weak transcription	Esophagus	oesophagus
40	chr15:73466600-73466800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr15:73466600-73466800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:73466600-73466800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:73466600-73466800	Enhancers	Fetal Muscle Leg	muscle
44	chr15:73466600-73466800	Enhancers	Left Ventricle	heart
45	chr15:73466600-73466800	Enhancers	Psoas Muscle	Psoas
46	chr15:73466600-73466800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr15:73466600-73467000	Enhancers	Aorta	Aorta
48	chr15:73466600-73467000	Enhancers	Brain Anterior Caudate	brain
49	chr15:73466600-73467000	Enhancers	Gastric	stomach
50	chr15:73466600-73467000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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