Variant report

Variant	rs4776629
Chromosome Location	chr15:73494346-73494347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73493630..73495142-chr15:73497332..73499715,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11072404	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12592184	0.90[EUR][1000 genomes]
rs1320241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1479336	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1620369	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1621216	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1631796	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1678246	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1678247	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1871387	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1979409	0.83[AFR][1000 genomes]
rs2619257	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2619258	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623989	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2623991	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2623992	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623999	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2660822	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2660825	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2660826	0.87[AFR][1000 genomes]
rs2660828	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2680336	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2680337	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2680342	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2680345	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2680346	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28619899	0.85[ASN][1000 genomes]
rs4564531	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4570800	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs471192	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4776627	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs481579	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs484515	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs484544	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs489873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs494493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs497539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs499098	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs513744	0.90[EUR][1000 genomes]
rs525587	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs529004	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs542259	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs549377	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs553238	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55787640	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561929	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58859253	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59537860	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66881913	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66931013	0.92[EUR][1000 genomes]
rs67999476	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs68053508	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68123262	0.92[EUR][1000 genomes]
rs7163504	0.91[ASN][1000 genomes]
rs7168651	0.92[EUR][1000 genomes]
rs7168829	0.92[EUR][1000 genomes]
rs8037761	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8039308	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9806271	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73455200-73500400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:73472000-73496800	Weak transcription	Ovary	ovary
3	chr15:73472200-73504600	Weak transcription	Left Ventricle	heart
4	chr15:73473400-73496400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:73474200-73498200	Weak transcription	Liver	Liver
6	chr15:73474200-73523800	Weak transcription	Esophagus	oesophagus
7	chr15:73474600-73500600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:73475200-73517600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:73475400-73495600	Weak transcription	Brain Anterior Caudate	brain
10	chr15:73476000-73494800	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:73476200-73495000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:73476200-73506200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:73477200-73497400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:73477600-73503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:73477800-73499200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:73482000-73504600	Weak transcription	Aorta	Aorta
17	chr15:73483600-73505800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:73483800-73494800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:73487200-73519800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:73488200-73494800	Weak transcription	Psoas Muscle	Psoas
21	chr15:73489000-73502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:73491400-73496600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:73492200-73494400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:73492200-73518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:73492400-73494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:73492400-73496800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:73492400-73516200	Weak transcription	Fetal Brain Male	brain
28	chr15:73493000-73495400	Weak transcription	Fetal Intestine Large	intestine
29	chr15:73493000-73495600	Weak transcription	Fetal Lung	lung
30	chr15:73493400-73504400	Weak transcription	Fetal Intestine Small	intestine
31	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:73494200-73495200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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