Variant report

Variant	rs58859253
Chromosome Location	chr15:73360262-73360263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73352462..73355061-chr15:73359053..73360956,2	MCF-7	breast:
2	chr15:73356525..73360663-chr15:73369090..73372368,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11072404	0.90[EUR][1000 genomes]
rs12592184	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1320241	0.90[EUR][1000 genomes]
rs1479336	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1620369	0.90[EUR][1000 genomes]
rs1621216	0.87[EUR][1000 genomes]
rs1631796	0.87[EUR][1000 genomes]
rs1678246	0.87[EUR][1000 genomes]
rs1678247	0.87[EUR][1000 genomes]
rs1871387	0.87[EUR][1000 genomes]
rs2619257	0.90[EUR][1000 genomes]
rs2619258	0.90[EUR][1000 genomes]
rs2623989	0.83[EUR][1000 genomes]
rs2623991	0.87[EUR][1000 genomes]
rs2623992	0.90[EUR][1000 genomes]
rs2660825	0.90[EUR][1000 genomes]
rs2660828	0.87[EUR][1000 genomes]
rs2680345	0.85[EUR][1000 genomes]
rs2680346	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28462360	0.84[ASN][1000 genomes]
rs28619899	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4564531	0.90[EUR][1000 genomes]
rs4570800	0.90[EUR][1000 genomes]
rs4776627	0.90[EUR][1000 genomes]
rs4776629	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs489873	0.83[EUR][1000 genomes]
rs513744	0.81[EUR][1000 genomes]
rs55787640	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56402186	0.84[ASN][1000 genomes]
rs59537860	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60685845	0.82[ASN][1000 genomes]
rs66466251	0.85[ASN][1000 genomes]
rs66881913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66931013	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67999476	0.90[ASN][1000 genomes]
rs68053508	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68123262	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7163504	0.94[ASN][1000 genomes]
rs7168651	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7168829	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72739445	0.85[ASN][1000 genomes]
rs8033192	0.82[ASN][1000 genomes]
rs8037761	0.87[EUR][1000 genomes]
rs8039308	0.85[EUR][1000 genomes]
rs8041219	0.82[ASN][1000 genomes]
rs9806271	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:73352000-73365000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:73353800-73363400	Weak transcription	Aorta	Aorta
4	chr15:73353800-73366000	Weak transcription	Fetal Intestine Large	intestine
5	chr15:73353800-73367400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:73354400-73364800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:73355200-73365200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:73355600-73365800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:73358000-73367000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:73359200-73366000	Weak transcription	Fetal Brain Male	brain
11	chr15:73359200-73370600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:73359400-73361000	Weak transcription	Brain Substantia Nigra	brain
13	chr15:73359600-73365400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:73359600-73367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:73359800-73365600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:73360000-73360400	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:73360200-73360400	Enhancers	Brain Angular Gyrus	brain
18	chr15:73360200-73361400	Enhancers	Brain Anterior Caudate	brain

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