Variant report

Variant	rs513744
Chromosome Location	chr15:73577491-73577492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11072404	0.90[EUR][1000 genomes]
rs12592184	0.81[EUR][1000 genomes]
rs1320241	0.90[EUR][1000 genomes]
rs1479336	0.82[EUR][1000 genomes]
rs1620369	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1621216	0.88[EUR][1000 genomes]
rs1631796	0.88[EUR][1000 genomes]
rs1678246	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1678247	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1871387	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1960423	0.99[ASN][1000 genomes]
rs2619257	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2619258	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623989	0.84[EUR][1000 genomes]
rs2623991	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2623992	0.90[EUR][1000 genomes]
rs2623999	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660822	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2660825	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2660828	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2680336	0.93[EUR][1000 genomes]
rs2680337	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2680342	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2680345	0.86[EUR][1000 genomes]
rs2680346	0.88[EUR][1000 genomes]
rs4564531	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4570800	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs471192	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4776627	0.90[EUR][1000 genomes]
rs4776629	0.90[EUR][1000 genomes]
rs481579	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs484515	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484544	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs489873	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs494493	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs497539	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs499098	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525587	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs529004	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs542259	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs549377	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs553238	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55787640	0.83[EUR][1000 genomes]
rs561929	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58859253	0.81[EUR][1000 genomes]
rs66881913	0.83[EUR][1000 genomes]
rs66931013	0.83[EUR][1000 genomes]
rs68053508	0.84[EUR][1000 genomes]
rs68123262	0.83[EUR][1000 genomes]
rs7168651	0.83[EUR][1000 genomes]
rs7168829	0.83[EUR][1000 genomes]
rs8037761	0.88[EUR][1000 genomes]
rs8039308	0.86[EUR][1000 genomes]
rs9806271	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
10	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:73550800-73581400	Weak transcription	HMEC	breast
12	chr15:73552000-73577800	Weak transcription	Psoas Muscle	Psoas
13	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
14	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
15	chr15:73553800-73581200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr15:73562800-73583000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:73563200-73578000	Weak transcription	Aorta	Aorta
19	chr15:73563200-73578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
21	chr15:73563400-73581000	Weak transcription	Fetal Brain Male	brain
22	chr15:73563400-73581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:73563400-73585600	Strong transcription	Fetal Intestine Large	intestine
24	chr15:73563600-73578800	Weak transcription	A549	lung
25	chr15:73563600-73593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:73566400-73597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr15:73570200-73597000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:73570400-73597000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:73571200-73577800	Weak transcription	Fetal Kidney	kidney
31	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
32	chr15:73572400-73587600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:73573200-73578000	Weak transcription	Fetal Lung	lung
34	chr15:73574000-73583600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:73574000-73596800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr15:73574400-73580000	Strong transcription	Brain Angular Gyrus	brain
37	chr15:73574600-73581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:73574800-73588000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:73575000-73580200	Strong transcription	Fetal Intestine Small	intestine
40	chr15:73575000-73583600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr15:73575000-73584200	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr15:73575200-73583600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:73575200-73583800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:73575600-73585600	Weak transcription	HepG2	liver
45	chr15:73576000-73578000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:73576000-73578000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:73576000-73578800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:73576000-73581000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:73576000-73586400	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:73576200-73577800	Weak transcription	Brain Anterior Caudate	brain

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