Variant report

Variant	rs2680337
Chromosome Location	chr15:73607867-73607868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73606322..73609750-chr15:73610871..73613707,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11072404	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1320241	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1479336	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1620369	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1621216	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1631796	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1678246	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1678247	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1871387	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1960423	1.00[ASN][1000 genomes]
rs2619257	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2619258	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623989	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2623991	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2623992	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2623999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2624000	0.82[EUR][1000 genomes]
rs2660822	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2660825	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2660828	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2680336	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2680342	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2680345	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2680346	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4564531	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4570800	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs471192	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4776627	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4776629	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs481579	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs484515	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs484544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs489873	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs494493	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs497539	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs499098	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs513744	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs525587	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs529004	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs542259	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs549377	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs553238	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55787640	0.83[EUR][1000 genomes]
rs561929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68053508	0.88[EUR][1000 genomes]
rs8037761	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8039308	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9806271	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
2	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:73596800-73609600	Weak transcription	Fetal Lung	lung
6	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:73597000-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:73597000-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:73598000-73610400	Weak transcription	Brain Germinal Matrix	brain
10	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
11	chr15:73598600-73610800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:73598800-73610800	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:73599600-73610800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:73600600-73611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:73600800-73610800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:73601400-73608800	Weak transcription	Fetal Intestine Large	intestine
19	chr15:73601400-73610000	Weak transcription	Fetal Stomach	stomach
20	chr15:73601400-73611800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:73601600-73610400	Weak transcription	Fetal Brain Female	brain
22	chr15:73601600-73615600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:73602000-73610000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:73602000-73611000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:73602000-73611400	Weak transcription	Aorta	Aorta
26	chr15:73603800-73608200	Weak transcription	Fetal Intestine Small	intestine
27	chr15:73605000-73610200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73606200-73610200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:73607600-73610200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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