Variant report

Variant	rs2624000
Chromosome Location	chr15:73604784-73604785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2623999	0.82[EUR][1000 genomes]
rs2680337	0.82[EUR][1000 genomes]
rs2680342	0.82[EUR][1000 genomes]
rs471192	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs481579	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs484515	0.82[EUR][1000 genomes]
rs484544	0.80[EUR][1000 genomes]
rs489873	0.80[EUR][1000 genomes]
rs499098	0.82[EUR][1000 genomes]
rs529004	0.82[EUR][1000 genomes]
rs549377	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs553238	0.82[EUR][1000 genomes]
rs561929	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73595600-73610200	Weak transcription	Fetal Brain Male	brain
2	chr15:73596400-73611000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:73596600-73610000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73596600-73610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:73596800-73609600	Weak transcription	Fetal Lung	lung
6	chr15:73596800-73616800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:73597000-73606000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:73597000-73609600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:73597000-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:73598000-73610400	Weak transcription	Brain Germinal Matrix	brain
11	chr15:73598200-73622800	Weak transcription	Right Atrium	heart
12	chr15:73598600-73610800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:73598800-73607400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:73598800-73610800	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:73598800-73620000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:73599600-73610800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:73600600-73611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:73600800-73606000	Weak transcription	Pancreas	Pancrea
19	chr15:73600800-73610800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:73601000-73617800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:73601400-73608800	Weak transcription	Fetal Intestine Large	intestine
22	chr15:73601400-73610000	Weak transcription	Fetal Stomach	stomach
23	chr15:73601400-73611800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:73601600-73610400	Weak transcription	Fetal Brain Female	brain
25	chr15:73601600-73615600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:73601800-73605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:73602000-73610000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:73602000-73611000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:73602000-73611400	Weak transcription	Aorta	Aorta
30	chr15:73603800-73608200	Weak transcription	Fetal Intestine Small	intestine
31	chr15:73604400-73605000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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