Variant report

Variant	rs68123262
Chromosome Location	chr15:73379081-73379082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11072404	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592184	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1320241	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1479336	0.83[EUR][1000 genomes]
rs1620369	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1621216	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1631796	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1678246	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1678247	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16957640	0.96[ASN][1000 genomes]
rs1871387	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2619257	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2619258	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2623989	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2623991	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2623992	0.92[EUR][1000 genomes]
rs2660825	0.92[EUR][1000 genomes]
rs2660828	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2680345	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2680346	0.90[EUR][1000 genomes]
rs28462360	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28619899	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4564531	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4570800	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4776627	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4776629	0.92[EUR][1000 genomes]
rs484515	0.83[EUR][1000 genomes]
rs484544	0.85[EUR][1000 genomes]
rs489873	0.85[EUR][1000 genomes]
rs499098	0.83[EUR][1000 genomes]
rs513744	0.83[EUR][1000 genomes]
rs525587	0.81[EUR][1000 genomes]
rs55787640	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs561929	0.83[EUR][1000 genomes]
rs56402186	0.95[ASN][1000 genomes]
rs56753901	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58859253	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59537860	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60685845	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6495056	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs66466251	0.96[ASN][1000 genomes]
rs66881913	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66931013	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67178516	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs67928653	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs68053508	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7163504	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7168651	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168829	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7170328	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7177002	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7177629	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72739445	0.96[ASN][1000 genomes]
rs8033192	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8037761	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8039308	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8041219	1.00[ASN][1000 genomes]
rs9806271	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73368200-73381000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:73371200-73388600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73371200-73397000	Weak transcription	Pancreas	Pancrea
4	chr15:73371600-73393800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:73374200-73393600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:73375400-73381000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:73375600-73381000	Weak transcription	Brain Substantia Nigra	brain
8	chr15:73375600-73391200	Weak transcription	Brain Angular Gyrus	brain
9	chr15:73378800-73379200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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