Variant report

Variant	rs7177002
Chromosome Location	chr15:73397301-73397302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73343623..73345362-chr15:73395334..73398187,2	MCF-7	breast:
2	chr15:73392625..73394510-chr15:73395683..73398549,2	K562	blood:
3	chr15:73395969..73398867-chr15:73399975..73402256,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11072404	0.94[ASN][1000 genomes]
rs12592184	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1320241	0.84[ASN][1000 genomes]
rs1479336	0.81[ASN][1000 genomes]
rs1620369	0.91[ASN][1000 genomes]
rs1621216	0.87[ASN][1000 genomes]
rs1631796	0.92[ASN][1000 genomes]
rs1678246	0.91[ASN][1000 genomes]
rs1678247	0.87[ASN][1000 genomes]
rs16957640	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871387	0.91[ASN][1000 genomes]
rs2619257	0.91[ASN][1000 genomes]
rs2619258	0.91[ASN][1000 genomes]
rs2623989	0.87[ASN][1000 genomes]
rs2623991	0.82[ASN][1000 genomes]
rs2660828	0.87[ASN][1000 genomes]
rs2680345	0.91[ASN][1000 genomes]
rs28462360	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4564531	0.91[ASN][1000 genomes]
rs4570800	0.92[ASN][1000 genomes]
rs4776627	0.96[ASN][1000 genomes]
rs55787640	0.81[ASN][1000 genomes]
rs56402186	0.91[ASN][1000 genomes]
rs56753901	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60685845	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495056	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66466251	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66881913	0.81[ASN][1000 genomes]
rs66931013	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs67178516	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67928653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68053508	0.85[ASN][1000 genomes]
rs68123262	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7163504	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7168651	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7168829	0.95[ASN][1000 genomes]
rs7170328	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177629	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72739445	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8033192	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8037761	0.94[ASN][1000 genomes]
rs8039308	0.89[ASN][1000 genomes]
rs8041219	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9806271	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73384600-73409200	Weak transcription	Fetal Lung	lung
2	chr15:73388800-73431200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:73389000-73401000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:73389000-73404000	Weak transcription	Ovary	ovary
5	chr15:73390000-73400800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:73392000-73400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:73392400-73397600	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:73392400-73397600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:73392400-73400800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:73392600-73398000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:73393200-73422400	Weak transcription	Aorta	Aorta
12	chr15:73394000-73400200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:73394000-73403400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:73394200-73414800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:73394400-73415000	Weak transcription	Fetal Stomach	stomach
16	chr15:73395200-73402200	Enhancers	Fetal Intestine Large	intestine
17	chr15:73395600-73402200	Enhancers	Fetal Intestine Small	intestine
18	chr15:73395800-73397400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:73396000-73406400	Weak transcription	Gastric	stomach
20	chr15:73396400-73444600	Weak transcription	Psoas Muscle	Psoas
21	chr15:73397000-73397400	Enhancers	Pancreas	Pancrea
22	chr15:73397000-73398400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:73397200-73398000	Enhancers	Duodenum Mucosa	Duodenum
24	chr15:73397200-73398200	Enhancers	Small Intestine	intestine
25	chr15:73397200-73398400	Enhancers	HepG2	liver
26	chr15:73397200-73409200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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