Variant report

Variant	rs12905791
Chromosome Location	chr15:93187729-93187730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93064927..93066555-chr15:93186642..93188513,2	MCF-7	breast:
2	chr15:93080164..93082598-chr15:93185700..93188569,2	MCF-7	breast:
3	chr15:93187167..93190385-chr15:93197959..93201879,3	K562	blood:
4	chr15:92925743..92927668-chr15:93187045..93188593,2	MCF-7	breast:
5	chr15:93017434..93020038-chr15:93186293..93188824,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12916286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917366	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs285764	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285766	0.83[ASN][1000 genomes]
rs285767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412555	1.00[ASN][1000 genomes]
rs71412556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93178000-93188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:93181200-93187800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:93182000-93197800	Weak transcription	Small Intestine	intestine
5	chr15:93182400-93188400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:93182400-93188400	Weak transcription	Fetal Lung	lung
7	chr15:93182400-93190600	Weak transcription	Psoas Muscle	Psoas
8	chr15:93182400-93191200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:93182600-93197200	Weak transcription	Fetal Kidney	kidney
10	chr15:93183000-93188200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:93186000-93188400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:93186000-93190600	Weak transcription	Fetal Intestine Small	intestine
14	chr15:93186200-93188200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:93186400-93189400	Enhancers	Placenta	Placenta
16	chr15:93186400-93194200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:93186800-93188400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:93186800-93189400	Enhancers	Gastric	stomach
19	chr15:93186800-93190000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:93186800-93191400	Enhancers	Stomach Mucosa	stomach
21	chr15:93186800-93192800	Enhancers	HUVEC	blood vessel
22	chr15:93187000-93187800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:93187000-93187800	Flanking Active TSS	GM12878-XiMat	blood
24	chr15:93187000-93188000	Enhancers	Lung	lung
25	chr15:93187000-93189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:93187000-93189600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:93187000-93190200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:93187000-93190400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr15:93187000-93190600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr15:93187200-93188200	Enhancers	Right Ventricle	heart
31	chr15:93187200-93188800	Enhancers	K562	blood
32	chr15:93187200-93189400	Enhancers	Esophagus	oesophagus
33	chr15:93187200-93189400	Enhancers	Left Ventricle	heart
34	chr15:93187200-93190200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:93187200-93193000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:93187400-93187800	Enhancers	Fetal Muscle Trunk	muscle
37	chr15:93187400-93187800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:93187400-93188000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:93187400-93188200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:93187400-93188600	Enhancers	Right Atrium	heart
41	chr15:93187400-93190200	Weak transcription	HSMM	muscle
42	chr15:93187400-93192000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:93187400-93193200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr15:93187400-93194000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:93187400-93194000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr15:93187600-93187800	Enhancers	Fetal Muscle Leg	muscle
47	chr15:93187600-93187800	Flanking Active TSS	Hela-S3	cervix
48	chr15:93187600-93188200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr15:93187600-93189200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:93187600-93189400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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