Variant report

Variant	rs71412556
Chromosome Location	chr15:93182185-93182186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93180068..93182597-chr15:93441905..93444737,2	MCF-7	breast:
2	chr15:93180406..93183251-chr15:93430441..93434489,3	MCF-7	breast:
3	chr15:93179390..93182218-chr15:93285466..93288131,2	MCF-7	breast:
4	chr15:93181102..93183442-chr15:93428358..93430400,2	MCF-7	breast:
5	chr15:93062742..93066323-chr15:93179954..93182328,3	MCF-7	breast:
6	chr15:93160520..93161372-chr15:93181511..93182283,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272888	Chromatin interaction
ENSG00000173575	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12905791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917366	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs285764	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285766	0.83[ASN][1000 genomes]
rs285767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412555	1.00[ASN][1000 genomes]
rs71412557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93176000-93182200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:93176800-93182600	Enhancers	Gastric	stomach
4	chr15:93177000-93182600	Enhancers	Fetal Muscle Leg	muscle
5	chr15:93177200-93183000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:93177400-93182400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:93177600-93182600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:93178000-93188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:93178200-93182400	Enhancers	Fetal Lung	lung
10	chr15:93178400-93182600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:93178400-93182800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr15:93178600-93182200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr15:93178800-93182200	Enhancers	Fetal Muscle Trunk	muscle
14	chr15:93178800-93187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:93179200-93182400	Enhancers	Colon Smooth Muscle	Colon
16	chr15:93179200-93182600	Enhancers	Left Ventricle	heart
17	chr15:93179600-93182600	Enhancers	Ovary	ovary
18	chr15:93179600-93183000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr15:93179800-93182200	Enhancers	Placenta	Placenta
20	chr15:93179800-93182400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr15:93179800-93182400	Enhancers	Right Ventricle	heart
22	chr15:93179800-93182400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:93179800-93182600	Enhancers	Esophagus	oesophagus
24	chr15:93179800-93182600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr15:93179800-93183000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:93180000-93182400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:93180200-93182400	Enhancers	Brain Hippocampus Middle	brain
28	chr15:93180200-93182600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:93180200-93182800	Enhancers	Brain Angular Gyrus	brain
30	chr15:93180200-93187200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr15:93180400-93182200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr15:93180400-93182200	Enhancers	HSMM	muscle
33	chr15:93180400-93182200	Enhancers	HSMMtube	muscle
34	chr15:93180400-93182400	Enhancers	Fetal Intestine Large	intestine
35	chr15:93180400-93182400	Enhancers	Fetal Stomach	stomach
36	chr15:93180400-93182600	Enhancers	Fetal Kidney	kidney
37	chr15:93180400-93183000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr15:93180800-93182200	Enhancers	Brain Substantia Nigra	brain
39	chr15:93180800-93182200	Enhancers	HepG2	liver
40	chr15:93180800-93182400	Enhancers	Brain Cingulate Gyrus	brain
41	chr15:93180800-93182600	Enhancers	GM12878-XiMat	blood
42	chr15:93181000-93182200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:93181000-93182400	Enhancers	Psoas Muscle	Psoas
44	chr15:93181000-93182400	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr15:93181200-93182400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr15:93181200-93187800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:93181400-93182400	Enhancers	Rectal Smooth Muscle	rectum
48	chr15:93181400-93182800	Enhancers	Liver	Liver
49	chr15:93181600-93182400	Enhancers	Right Atrium	heart
50	chr15:93181600-93182600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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