Variant report

Variant	rs12905903
Chromosome Location	chr15:51997737-51997738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51990726..51993605-chr15:51996321..51998740,2	MCF-7	breast:
2	chr15:51991390..51994698-chr15:51996190..51998071,3	K562	blood:
3	chr15:51997530..52001140-chr15:52004851..52007449,4	K562	blood:
4	chr15:51996675..51998728-chr15:52028512..52030813,2	MCF-7	breast:
5	chr15:51997400..52000250-chr15:52046573..52049240,2	MCF-7	breast:
6	chr15:51991056..51992762-chr15:51996758..51999094,2	K562	blood:
7	chr15:51984067..51985645-chr15:51997291..51999601,2	MCF-7	breast:
8	chr15:51988416..51990476-chr15:51996919..51998873,2	MCF-7	breast:
9	chr15:51997530..51999186-chr15:52005209..52007449,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259296	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12905464	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305720	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508455	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28555597	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35776517	0.89[EUR][1000 genomes]
rs60694229	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
3	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
5	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
6	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:51984800-52018600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:51986000-51998400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:51990000-52016800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:51991400-52018800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:51992200-52018800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:51992600-52008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:51993600-51997800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:51993600-52006200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:51993600-52016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:51994200-52003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:51994400-52007400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:51995200-51999200	Weak transcription	Brain Germinal Matrix	brain
20	chr15:51995400-51999400	Enhancers	K562	blood
21	chr15:51995400-52006800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:51995400-52013200	Weak transcription	Brain Substantia Nigra	brain
23	chr15:51997200-52000800	Strong transcription	Fetal Brain Female	brain
24	chr15:51997600-52005200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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