Variant report

Variant	rs35776517
Chromosome Location	chr15:51994705-51994706
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51989352..51991086-chr15:51993502..51995016,2	K562	blood:
2	chr15:51990309..51992367-chr15:51994326..51996049,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12905464	0.89[EUR][1000 genomes]
rs12905903	0.89[EUR][1000 genomes]
rs2305720	0.88[EUR][1000 genomes]
rs2305721	0.84[ASN][1000 genomes]
rs60154994	0.83[ASN][1000 genomes]
rs60694229	0.98[EUR][1000 genomes]
rs7181921	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
3	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
5	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
6	chr15:51982200-51996600	Strong transcription	Fetal Brain Female	brain
7	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:51984800-52018600	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:51986000-51998400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:51990000-52016800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:51990400-51997600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:51991400-52018800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:51992200-52018800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:51992600-52008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:51993600-51997800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:51993600-52006200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:51993600-52016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:51993800-51995000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:51993800-51995400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:51994200-51995000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:51994200-52003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:51994400-52007400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:51994600-51995000	Enhancers	K562	blood

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