Variant report

Variant	rs12907385
Chromosome Location	chr15:82415798-82415799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82414285..82416905-chr15:82427486..82429493,2	K562	blood:
2	chr15:82405061..82407968-chr15:82415699..82418455,2	K562	blood:
3	chr15:82414332..82417026-chr15:82422098..82424897,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12898322	0.84[EUR][1000 genomes]
rs12904246	0.84[AMR][1000 genomes]
rs12904292	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12913622	0.84[AMR][1000 genomes]
rs12916424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17269141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355437	1.00[MEX][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82402400-82416600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:82404800-82416600	Weak transcription	Spleen	Spleen
4	chr15:82405600-82428000	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:82405800-82416800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:82405800-82420200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:82406000-82422600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:82406200-82430200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:82406600-82416600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:82406800-82423600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:82407800-82416400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:82407800-82418800	Weak transcription	Lung	lung
13	chr15:82408000-82420800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:82408000-82421000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:82408000-82421200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:82408000-82422200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:82408000-82422400	Weak transcription	Brain Germinal Matrix	brain
18	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
19	chr15:82408200-82416400	Weak transcription	Left Ventricle	heart
20	chr15:82408200-82416400	Weak transcription	Dnd41	blood
21	chr15:82408200-82420000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:82408200-82420400	Weak transcription	Fetal Thymus	thymus
23	chr15:82408400-82417200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:82408400-82431800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:82408600-82419000	Weak transcription	Fetal Intestine Large	intestine
26	chr15:82408800-82416400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:82408800-82420400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:82408800-82432400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:82409600-82416000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:82409800-82422200	Weak transcription	Pancreas	Pancrea
31	chr15:82410000-82420800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:82410200-82420200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:82410200-82422000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:82410400-82424600	Weak transcription	Fetal Brain Female	brain
35	chr15:82410800-82416400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:82410800-82417000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:82411200-82420800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:82411200-82428400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr15:82411400-82420200	Weak transcription	Adipose Nuclei	Adipose
40	chr15:82411600-82422200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:82412000-82416400	Weak transcription	Fetal Intestine Small	intestine
42	chr15:82412000-82420200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:82412000-82420600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:82412000-82426000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:82412200-82421000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:82413400-82416200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:82413400-82416400	Enhancers	HMEC	breast
48	chr15:82413600-82416200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:82413600-82416200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr15:82413800-82415800	Enhancers	Fetal Brain Male	brain

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