Variant report

Variant	rs17269141
Chromosome Location	chr15:82421654-82421655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82421528..82423161-chr15:82424942..82426768,2	MCF-7	breast:
2	chr15:82421352..82423099-chr15:82438415..82441002,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12898322	0.84[EUR][1000 genomes]
rs12904246	0.84[AMR][1000 genomes]
rs12904292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12907385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12913622	0.84[AMR][1000 genomes]
rs12916424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82405600-82428000	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:82406000-82422600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr15:82406200-82430200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:82406800-82423600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:82408000-82422200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:82408000-82422400	Weak transcription	Brain Germinal Matrix	brain
8	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
9	chr15:82408400-82431800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:82408800-82432400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:82409800-82422200	Weak transcription	Pancreas	Pancrea
12	chr15:82410200-82422000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:82410400-82424600	Weak transcription	Fetal Brain Female	brain
14	chr15:82411200-82428400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr15:82411600-82422200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:82412000-82426000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:82414400-82429600	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:82415200-82422600	Strong transcription	Primary B cells from cord blood	blood
19	chr15:82415400-82428200	Weak transcription	Fetal Heart	heart
20	chr15:82415600-82422000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:82415600-82422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:82415600-82426000	Weak transcription	Hela-S3	cervix
23	chr15:82415600-82426600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:82415600-82430200	Weak transcription	Stomach Mucosa	stomach
25	chr15:82415600-82431800	Weak transcription	HUVEC	blood vessel
26	chr15:82416200-82443400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:82416400-82427000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:82416400-82430400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:82416400-82431400	Strong transcription	Primary T cells from cord blood	blood
31	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
32	chr15:82416600-82443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:82417200-82422000	Weak transcription	Left Ventricle	heart
34	chr15:82417200-82422600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:82417800-82422200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:82418600-82421800	Enhancers	Liver	Liver
37	chr15:82418800-82422200	Weak transcription	Psoas Muscle	Psoas
38	chr15:82419000-82428000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:82419000-82431200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:82419200-82423000	Weak transcription	Lung	lung
41	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:82419600-82424400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:82419600-82428200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr15:82419800-82422200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:82420000-82424800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:82420200-82422200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:82420200-82423200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:82420200-82423200	Strong transcription	Adipose Nuclei	Adipose
50	chr15:82420200-82423200	Strong transcription	Rectal Mucosa Donor 31	rectum

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