Variant report
Variant | rs12909889 |
---|---|
Chromosome Location | chr15:87468765-87468766 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10852081 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap] |
rs12913974 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1368627 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs1433455 | 0.84[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs2305241 | 0.88[ASN][1000 genomes] |
rs2701429 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4887520 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4887521 | 0.84[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs7166106 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs7178010 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
rs7180940 | 0.84[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs8029736 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8031815 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1039254 | chr15:87070357-87942988 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv533986 | chr15:87100872-87633926 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1039005 | chr15:87228489-87813438 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv542465 | chr15:87228489-87813438 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv1044157 | chr15:87458558-88101699 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:87463200-87469200 | Weak transcription | Fetal Heart | heart |