Variant report

Variant	rs12910486
Chromosome Location	chr15:49622324-49622325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49590980..49593614-chr15:49622118..49624622,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1864298	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3959660	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
2	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:49566600-49623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:49582600-49628200	Weak transcription	Spleen	Spleen
5	chr15:49597200-49624800	Weak transcription	Fetal Kidney	kidney
6	chr15:49597400-49624200	Weak transcription	K562	blood
7	chr15:49599200-49636800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:49607200-49623800	Weak transcription	Psoas Muscle	Psoas
9	chr15:49607600-49624400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:49608000-49631800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:49608600-49631800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:49610400-49622400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:49612000-49624200	Weak transcription	Lung	lung
14	chr15:49612200-49623200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:49612200-49631600	Weak transcription	Fetal Intestine Small	intestine
16	chr15:49612200-49639000	Weak transcription	NHEK	skin
17	chr15:49612600-49639400	Weak transcription	Right Ventricle	heart
18	chr15:49612800-49626600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:49612800-49638000	Weak transcription	Brain Angular Gyrus	brain
20	chr15:49613000-49622600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:49613000-49622600	Weak transcription	Brain Anterior Caudate	brain
22	chr15:49613000-49624400	Weak transcription	GM12878-XiMat	blood
23	chr15:49613000-49627600	Weak transcription	HUVEC	blood vessel
24	chr15:49613000-49628200	Weak transcription	Ovary	ovary
25	chr15:49613000-49633200	Weak transcription	Gastric	stomach
26	chr15:49613200-49623200	Weak transcription	HMEC	breast
27	chr15:49613200-49625000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:49613200-49625000	Weak transcription	Hela-S3	cervix
29	chr15:49613200-49633200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:49613600-49625400	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:49613600-49633800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:49613600-49637200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:49613600-49643000	Weak transcription	Pancreas	Pancrea
34	chr15:49613800-49625000	Weak transcription	Fetal Brain Female	brain
35	chr15:49613800-49632600	Weak transcription	Fetal Thymus	thymus
36	chr15:49613800-49639800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:49614000-49622800	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:49614000-49624400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:49614000-49624400	Weak transcription	NHLF	lung
40	chr15:49614200-49631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:49614200-49631600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:49614200-49631800	Weak transcription	Aorta	Aorta
43	chr15:49614200-49632000	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:49614200-49637200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:49614200-49640200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:49614200-49640200	Weak transcription	Small Intestine	intestine
47	chr15:49614400-49633400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:49614400-49634000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:49614800-49628800	Weak transcription	Osteobl	bone
50	chr15:49614800-49631800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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