Variant report

Variant	rs3959660
Chromosome Location	chr15:49550890-49550891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10438273	1.00[YRI][hapmap]
rs11070688	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11070689	1.00[YRI][hapmap]
rs12910486	1.00[EUR][1000 genomes]
rs1864298	0.87[EUR][1000 genomes]
rs2059934	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2086255	1.00[YRI][hapmap]
rs8039064	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569365	chr15:49545009-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv569375	chr15:49545192-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
2	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
3	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
4	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:49535600-49557000	Weak transcription	Fetal Intestine Small	intestine
7	chr15:49535600-49564600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:49535800-49563400	Weak transcription	NH-A	brain
11	chr15:49535800-49566800	Weak transcription	Left Ventricle	heart
12	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:49536200-49553200	Weak transcription	Primary B cells from cord blood	blood
14	chr15:49537600-49566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:49539400-49553200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:49539600-49563000	Weak transcription	Ovary	ovary
17	chr15:49540000-49552200	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:49540000-49566200	Weak transcription	K562	blood
19	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
20	chr15:49540200-49552200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:49540600-49557400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:49541400-49551400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:49541400-49562600	Weak transcription	Dnd41	blood
24	chr15:49541600-49557200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:49541600-49575000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:49541800-49558800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:49542000-49560800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr15:49542200-49557200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:49542800-49560800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:49543200-49558000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:49543800-49564600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:49543800-49574200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:49546400-49557200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:49548400-49562200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:49548600-49553200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:49548800-49575800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:49549400-49575200	Weak transcription	Hela-S3	cervix
39	chr15:49550200-49551000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:49550400-49551000	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr15:49550400-49551000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:49550400-49551000	Enhancers	Osteobl	bone
43	chr15:49550600-49551000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
44	chr15:49550600-49551000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:49550600-49551000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:49550800-49559400	Weak transcription	NHLF	lung
47	chr15:49550800-49560800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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