Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10431777	0.88[EUR][1000 genomes]
rs10438273	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11070688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594252	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12594585	1.00[CEU][hapmap]
rs1904315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059934	1.00[YRI][hapmap]
rs2086255	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs3959660	1.00[YRI][hapmap]
rs57815447	0.81[EUR][1000 genomes]
rs72727224	0.81[EUR][1000 genomes]
rs72727237	0.81[EUR][1000 genomes]
rs72727256	0.88[EUR][1000 genomes]
rs72727276	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72727277	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72727285	0.91[EUR][1000 genomes]
rs72727291	0.86[EUR][1000 genomes]
rs72727294	0.86[EUR][1000 genomes]
rs72727298	0.86[EUR][1000 genomes]
rs8031414	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs8039064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8043168	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv442375	chr15:49652524-49684082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49665000-49673200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:49665200-49672200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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