Variant report

Variant	rs72727237
Chromosome Location	chr15:49466426-49466427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49462876..49466490-chr15:49481891..49484473,3	K562	blood:
2	chr15:49463826..49467662-chr15:49477786..49482554,6	K562	blood:
3	chr15:49464639..49466779-chr15:49488550..49492378,3	K562	blood:
4	chr15:49463856..49466607-chr15:49479734..49481312,2	K562	blood:
5	chr15:49461181..49463665-chr15:49466365..49468672,2	MCF-7	breast:
6	chr15:49464598..49467246-chr15:49506406..49508580,2	K562	blood:
7	chr15:49457613..49460436-chr15:49466302..49469375,3	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000264210	Chromatin interaction
ENSG00000243338	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10431777	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11070688	0.81[EUR][1000 genomes]
rs11070689	0.81[EUR][1000 genomes]
rs12594252	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1904315	0.81[EUR][1000 genomes]
rs2086255	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57815447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727206	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72727208	0.83[ASN][1000 genomes]
rs72727209	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72727210	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72727218	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72727219	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72727221	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72727224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727243	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72727256	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72741962	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8031414	0.88[EUR][1000 genomes]
rs8039064	0.90[EUR][1000 genomes]
rs8043168	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463000-49466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:49463000-49479600	Weak transcription	Left Ventricle	heart
3	chr15:49463200-49467200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:49463200-49467200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:49463200-49467600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr15:49463200-49467600	Weak transcription	Stomach Mucosa	stomach
7	chr15:49463200-49471800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:49463200-49472000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:49463200-49472000	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:49463200-49479600	Weak transcription	Right Ventricle	heart
11	chr15:49463200-49479800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:49463200-49508200	Weak transcription	Ovary	ovary
13	chr15:49463400-49467400	Weak transcription	Fetal Intestine Small	intestine
14	chr15:49463400-49469800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:49463400-49480000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:49463600-49471400	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:49463600-49472400	Weak transcription	HUVEC	blood vessel
18	chr15:49463600-49474200	Weak transcription	Fetal Stomach	stomach
19	chr15:49463600-49474400	Weak transcription	Primary B cells from cord blood	blood
20	chr15:49463600-49477200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:49463600-49479400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:49463600-49479600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:49463600-49494400	Weak transcription	Fetal Thymus	thymus
24	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:49463600-49527800	Weak transcription	HSMM	muscle
26	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
27	chr15:49463800-49467000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:49463800-49467200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:49463800-49467200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr15:49463800-49468000	Weak transcription	Fetal Brain Male	brain
31	chr15:49463800-49471600	Weak transcription	HMEC	breast
32	chr15:49463800-49472400	Weak transcription	Fetal Brain Female	brain
33	chr15:49463800-49472600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:49463800-49472600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:49463800-49472800	Weak transcription	Fetal Lung	lung
36	chr15:49463800-49479200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:49463800-49479400	Weak transcription	Osteobl	bone
38	chr15:49464000-49467000	Weak transcription	A549	lung
39	chr15:49464000-49469600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:49464000-49474400	Weak transcription	NHDF-Ad	bronchial
41	chr15:49464000-49482800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:49464000-49491600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:49464200-49466600	Weak transcription	Spleen	Spleen
44	chr15:49464200-49467200	Weak transcription	Gastric	stomach
45	chr15:49464200-49467200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:49464200-49467200	Weak transcription	HepG2	liver
47	chr15:49464200-49470400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:49464200-49470600	Weak transcription	Lung	lung
49	chr15:49464200-49470600	Weak transcription	Pancreas	Pancrea
50	chr15:49464200-49471600	Weak transcription	Fetal Muscle Trunk	muscle

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