Variant report

Variant	rs2086255
Chromosome Location	chr15:49557933-49557934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10431777	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10438273	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs11070688	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs11070689	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs12594252	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17393601	1.00[JPT][hapmap]
rs1904315	0.86[EUR][1000 genomes]
rs2059934	1.00[YRI][hapmap]
rs3959660	1.00[YRI][hapmap]
rs57815447	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72727209	0.80[ASN][1000 genomes]
rs72727210	0.81[ASN][1000 genomes]
rs72727218	0.85[ASN][1000 genomes]
rs72727219	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72727221	0.90[ASN][1000 genomes]
rs72727224	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72727237	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72727243	0.95[ASN][1000 genomes]
rs72727256	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8031414	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs8031610	0.87[JPT][hapmap]
rs8039064	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs8043168	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569365	chr15:49545009-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv569375	chr15:49545192-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
2	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
3	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:49535600-49564600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:49535800-49563400	Weak transcription	NH-A	brain
9	chr15:49535800-49566800	Weak transcription	Left Ventricle	heart
10	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:49537600-49566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:49539600-49563000	Weak transcription	Ovary	ovary
13	chr15:49540000-49566200	Weak transcription	K562	blood
14	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
15	chr15:49541400-49562600	Weak transcription	Dnd41	blood
16	chr15:49541600-49575000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:49541800-49558800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:49542000-49560800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr15:49542800-49560800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:49543200-49558000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:49543800-49564600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:49543800-49574200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:49548400-49562200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:49548800-49575800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:49549400-49575200	Weak transcription	Hela-S3	cervix
27	chr15:49550800-49559400	Weak transcription	NHLF	lung
28	chr15:49550800-49560800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:49551000-49558400	Weak transcription	Primary T cells from cord blood	blood
30	chr15:49551000-49574200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:49551000-49575400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:49554800-49575400	Weak transcription	Fetal Lung	lung
33	chr15:49557000-49558800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:49557200-49558000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr15:49557200-49558400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr15:49557200-49558600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:49557200-49558800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:49557400-49558400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
40	chr15:49557400-49558800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr15:49557600-49558000	ZNF genes & repeats	Esophagus	oesophagus
42	chr15:49557600-49558800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
43	chr15:49557800-49558000	Weak transcription	Primary B cells from cord blood	blood
44	chr15:49557800-49558400	Weak transcription	Fetal Intestine Large	intestine
45	chr15:49557800-49558600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr15:49557800-49562600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:49557800-49563200	Weak transcription	Aorta	Aorta
48	chr15:49557800-49569600	Weak transcription	Fetal Intestine Small	intestine
49	chr15:49557800-49575800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:49557800-49575800	Weak transcription	Fetal Stomach	stomach

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