Variant report

Variant	rs72727277
Chromosome Location	chr15:49685374-49685375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11070688	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11070689	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1904315	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72727276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727285	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72727291	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72727294	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72727298	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8039064	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49683800-49687600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:49683800-49687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:49683800-49687600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:49684000-49687400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:49684000-49687600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:49684000-49687600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:49684200-49687600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:49684200-49687600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:49684200-49687600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:49684200-49687600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:49684200-49687600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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