Variant report

Variant	rs12911934
Chromosome Location	chr15:35472253-35472254
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10444865	0.91[JPT][hapmap]
rs12439483	1.00[JPT][hapmap]
rs13313465	1.00[JPT][hapmap]
rs16960582	1.00[JPT][hapmap]
rs16960585	0.91[JPT][hapmap]
rs2166157	0.91[JPT][hapmap]
rs4597271	0.91[JPT][hapmap]
rs4924607	0.91[JPT][hapmap]
rs8024405	0.91[JPT][hapmap]
rs8026065	0.91[JPT][hapmap]
rs8027994	0.91[JPT][hapmap]
rs8031065	0.91[JPT][hapmap]
rs9972525	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35466000-35473400	Weak transcription	NHLF	lung
3	chr15:35470800-35473400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:35472000-35472600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:35472200-35473200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:35472200-35473200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:35472200-35473200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:35472200-35473200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:35472200-35473200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:35472200-35473400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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