Variant report

Variant	rs8024405
Chromosome Location	chr15:35473889-35473890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:35473847-35474052	K562	blood:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
2	JUN	chr15:35473768-35474103	HUVEC	blood vessel:	n/a	chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
3	FOS	chr15:35473764-35474084	MCF10A-Er-Src	breast:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
4	FOXM1	chr15:35473693-35474191	ECC-1	luminal epithelium:	n/a	n/a
5	TEAD4	chr15:35473708-35474106	ECC-1	luminal epithelium:	n/a	n/a
6	NR3C1	chr15:35473750-35473993	ECC-1	luminal epithelium:	n/a	n/a
7	TCF12	chr15:35473763-35474164	ECC-1	luminal epithelium:	n/a	n/a
8	FOS	chr15:35473594-35474079	HUVEC	blood vessel:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
9	BATF	chr15:35473800-35474130	GM12878	blood:	n/a	chr15:35473943-35473953 chr15:35473942-35473953 chr15:35473947-35473957
10	FOS	chr15:35473757-35474124	MCF10A-Er-Src	breast:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
11	FOS	chr15:35473753-35474119	MCF10A-Er-Src	breast:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
12	NR3C1	chr15:35473737-35473991	ECC-1	luminal epithelium:	n/a	n/a
13	EP300	chr15:35473604-35474182	ECC-1	luminal epithelium:	n/a	chr15:35473945-35473954 chr15:35473946-35473955
14	MAFK	chr15:35473769-35474107	IMR90	lung:	n/a	chr15:35474010-35474021 chr15:35474009-35474023 chr15:35474011-35474022 chr15:35474010-35474021
15	EBF1	chr15:35473833-35474147	GM12878	blood:	n/a	n/a
16	EP300	chr15:35473807-35474103	GM12878	blood:	n/a	chr15:35473945-35473954 chr15:35473946-35473955
17	FOS	chr15:35473776-35474080	MCF10A-Er-Src	breast:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955
18	BATF	chr15:35473802-35474047	GM12878	blood:	n/a	chr15:35473943-35473953 chr15:35473942-35473953 chr15:35473947-35473957
19	BCL11A	chr15:35473838-35474060	GM12878	blood:	n/a	chr15:35473945-35473954 chr15:35473946-35473955
20	JUND	chr15:35473842-35474052	HepG2	liver:	n/a	chr15:35473944-35473955 chr15:35473946-35473954 chr15:35473947-35473954 chr15:35473946-35473955 chr15:35473945-35473955

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35470907..35473908-chr15:35474557..35477034,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114546.1-10	chr15:35473749-35474101	NONHSAT041624

Variant related genes	Relation type
ANP32AP1	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10444865	0.85[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11073085	0.81[EUR][1000 genomes]
rs11632681	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635872	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12232307	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12439483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591832	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12900262	0.89[ASN][1000 genomes]
rs12906317	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12911934	0.91[JPT][hapmap]
rs12917029	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13313465	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1380089	0.89[EUR][1000 genomes]
rs1458883	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16960582	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16960585	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903077	0.86[EUR][1000 genomes]
rs2166157	0.91[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28448413	0.87[ASN][1000 genomes]
rs4597271	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923912	0.81[EUR][1000 genomes]
rs4924584	0.86[ASN][1000 genomes]
rs4924607	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59469657	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59766603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62006772	0.85[ASN][1000 genomes]
rs67156387	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8026065	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8027994	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8031065	0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9972525	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35473200-35475000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr15:35473200-35475200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:35473200-35475600	Enhancers	GM12878-XiMat	blood
4	chr15:35473200-35476000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr15:35473200-35476000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr15:35473200-35477000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:35473200-35478000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:35473400-35474000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:35473400-35474000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:35473400-35475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:35473600-35474000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:35473600-35476600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:35473800-35474000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:35473800-35474000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:35473800-35474000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:35473800-35474200	Enhancers	Rectal Smooth Muscle	rectum
17	chr15:35473800-35477600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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