Variant report

Variant	rs12591832
Chromosome Location	chr15:35461890-35461891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATPBD4-1	chr15:35461826-35461899	ENSG00000259336.1

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10444865	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11632681	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635872	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12232307	0.98[ASN][1000 genomes]
rs12439483	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12900262	0.87[ASN][1000 genomes]
rs12906317	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12911934	0.91[JPT][hapmap]
rs12917029	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13313465	0.98[ASN][1000 genomes]
rs1380089	0.85[EUR][1000 genomes]
rs1458883	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16960582	0.98[ASN][1000 genomes]
rs16960585	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1903077	0.83[EUR][1000 genomes]
rs2166157	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28448413	0.85[ASN][1000 genomes]
rs4597271	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924584	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4924607	0.80[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59469657	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59766603	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62006772	0.83[ASN][1000 genomes]
rs6495758	0.85[YRI][hapmap]
rs67156387	0.98[ASN][1000 genomes]
rs8024405	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8026065	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8027994	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8031065	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9972525	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3323896	chr15:35461212-35462267	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35459200-35462200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:35459200-35467800	Weak transcription	Fetal Kidney	kidney
4	chr15:35459800-35463000	Enhancers	NHDF-Ad	bronchial
5	chr15:35460000-35462800	Enhancers	Rectal Smooth Muscle	rectum
6	chr15:35460200-35463400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:35460400-35462600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:35460600-35463400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:35461000-35462800	Enhancers	Colon Smooth Muscle	Colon
10	chr15:35461000-35463600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:35461200-35462200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:35461200-35462200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:35461200-35462400	Weak transcription	NH-A	brain
14	chr15:35461200-35462600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:35461400-35462000	Enhancers	HUVEC	blood vessel
16	chr15:35461600-35462200	Enhancers	Brain Anterior Caudate	brain
17	chr15:35461600-35462800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:35461800-35462000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:35461800-35463000	Enhancers	NHLF	lung
20	chr15:35461800-35463200	Enhancers	Osteobl	bone
21	chr15:35461800-35463600	Enhancers	K562	blood

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