Variant report

Variant	rs1380089
Chromosome Location	chr15:35468405-35468406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35466950..35469719-chr15:35470407..35472296,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10152519	0.97[ASN][1000 genomes]
rs10152995	0.98[ASN][1000 genomes]
rs1017553	0.90[ASN][1000 genomes]
rs10444813	0.97[ASN][1000 genomes]
rs11073085	0.88[EUR][1000 genomes]
rs11073086	0.82[ASN][1000 genomes]
rs11632681	0.88[EUR][1000 genomes]
rs11635872	0.85[EUR][1000 genomes]
rs11854262	0.82[ASN][1000 genomes]
rs11855339	0.82[ASN][1000 genomes]
rs12439483	0.89[EUR][1000 genomes]
rs12591832	0.85[EUR][1000 genomes]
rs12906317	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12917029	0.85[EUR][1000 genomes]
rs1458883	0.86[EUR][1000 genomes]
rs1458885	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16960534	0.82[ASN][1000 genomes]
rs16960585	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs16960587	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16960605	0.95[ASN][1000 genomes]
rs1903077	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2168959	0.86[ASN][1000 genomes]
rs4597271	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs4923912	0.88[EUR][1000 genomes]
rs4924607	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs55662900	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55763113	0.86[ASN][1000 genomes]
rs56225597	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59469657	0.89[EUR][1000 genomes]
rs59766603	0.89[EUR][1000 genomes]
rs62006770	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62006771	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6495758	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73389201	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8024405	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs8026065	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs8027994	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs8031065	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs8038846	0.89[ASN][1000 genomes]
rs967370	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9944276	0.85[ASN][1000 genomes]
rs9972525	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35466000-35473400	Weak transcription	NHLF	lung
3	chr15:35466200-35468600	Enhancers	K562	blood

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