Variant report

Variant	rs62006770
Chromosome Location	chr15:35465206-35465207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35464572..35466280-chr15:35519004..35521985,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10152519	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152995	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1017553	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10444813	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11073086	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11854262	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11854457	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11855339	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11857698	0.89[EUR][1000 genomes]
rs12232307	0.86[EUR][1000 genomes]
rs13313465	0.86[EUR][1000 genomes]
rs1380089	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1458885	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960534	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16960582	0.85[EUR][1000 genomes]
rs16960587	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16960605	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1903077	0.89[ASN][1000 genomes]
rs2168959	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55662900	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55763113	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56225597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62006771	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495758	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67156387	0.87[EUR][1000 genomes]
rs73389201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038846	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs967370	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944276	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9972525	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35459200-35467800	Weak transcription	Fetal Kidney	kidney
3	chr15:35462600-35465400	Weak transcription	HSMM	muscle
4	chr15:35462800-35465400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:35463000-35465600	Weak transcription	NHDF-Ad	bronchial
6	chr15:35463200-35466200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:35463400-35465600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:35463400-35467600	Weak transcription	Brain Anterior Caudate	brain
9	chr15:35463600-35465400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:35463600-35465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:35463600-35465400	Weak transcription	K562	blood
12	chr15:35465200-35466000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:35465200-35466000	Enhancers	NHLF	lung

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