Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35461196..35463011-chr15:35475890..35477698,2	K562	blood:
2	chr15:35470907..35473908-chr15:35474557..35477034,3	K562	blood:

Variant related genes	Relation type
ENSG00000259336	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10152519	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10152995	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1017553	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10444813	0.95[ASN][1000 genomes]
rs11855339	0.80[ASN][1000 genomes]
rs1380089	0.95[ASN][1000 genomes]
rs1458885	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16960587	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1903077	0.86[ASN][1000 genomes]
rs2168959	0.81[ASN][1000 genomes]
rs55662900	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55763113	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56225597	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62006770	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62006771	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6495758	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73389201	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8038846	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs967370	0.93[ASN][1000 genomes]
rs9944276	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35473200-35477000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr15:35473200-35478000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr15:35473800-35477600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:35474200-35478600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:35475000-35477000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr15:35475200-35477000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:35475200-35477400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:35475400-35477000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:35476000-35477800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr15:35476000-35477800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr15:35476000-35478400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:35476200-35477800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:35476400-35478400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:35476600-35477600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:35476600-35477600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:35476600-35479200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr15:35476800-35477000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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