Variant report

Variant	rs6495758
Chromosome Location	chr15:35465985-35465986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:35465700-35466061	K562	blood:	n/a	n/a
2	JUND	chr15:35465396-35466121	SK-N-SH	brain:	n/a	chr15:35465822-35465833
3	TRIM28	chr15:35465593-35466269	K562	blood:	n/a	n/a
4	STAT5A	chr15:35465594-35466080	K562	blood:	n/a	n/a
5	FOS	chr15:35465678-35466005	MCF10A-Er-Src	breast:	n/a	n/a
6	MAFF	chr15:35465677-35466112	K562	blood:	n/a	n/a
7	YY1	chr15:35465714-35466012	K562	blood:	n/a	n/a
8	JUND	chr15:35465644-35466006	HepG2	liver:	n/a	chr15:35465822-35465833
9	TBP	chr15:35465716-35466005	K562	blood:	n/a	n/a
10	FOSL1	chr15:35465694-35466090	K562	blood:	n/a	chr15:35465822-35465833
11	FOS	chr15:35465640-35465996	MCF10A-Er-Src	breast:	n/a	n/a
12	ZNF384	chr15:35465584-35465994	K562	blood:	n/a	n/a
13	JUN	chr15:35465632-35466065	K562	blood:	n/a	n/a
14	BACH1	chr15:35465409-35466079	K562	blood:	n/a	n/a
15	MAFK	chr15:35465565-35466219	K562	blood:	n/a	n/a
16	MAX	chr15:35465707-35466244	K562	blood:	n/a	n/a
17	JUND	chr15:35465399-35466102	K562	blood:	n/a	chr15:35465822-35465833
18	ARID3A	chr15:35465676-35466253	K562	blood:	n/a	n/a
19	ZMIZ1	chr15:35465743-35466043	K562	blood:	n/a	n/a
20	FOSL2	chr15:35465549-35466063	SK-N-SH	brain:	n/a	n/a
21	CUX1	chr15:35465719-35466054	K562	blood:	n/a	n/a
22	TEAD4	chr15:35465619-35466032	K562	blood:	n/a	n/a
23	ZNF143	chr15:35465727-35466102	K562	blood:	n/a	n/a
24	TAL1	chr15:35465558-35466296	K562	blood:	n/a	n/a
25	TEAD4	chr15:35465355-35466325	K562	blood:	n/a	n/a
26	EP300	chr15:35465651-35466076	K562	blood:	n/a	n/a
27	CCNT2	chr15:35465695-35466261	K562	blood:	n/a	n/a
28	MAZ	chr15:35465700-35466140	K562	blood:	n/a	n/a
29	MAX	chr15:35465802-35466168	K562	blood:	n/a	n/a
30	RCOR1	chr15:35465671-35466312	K562	blood:	n/a	n/a
31	FOS	chr15:35465696-35465990	MCF10A-Er-Src	breast:	n/a	n/a
32	JUN	chr15:35465637-35466003	K562	blood:	n/a	n/a
33	JUN	chr15:35465292-35466101	K562	blood:	n/a	n/a
34	ATF3	chr15:35465625-35466006	K562	blood:	n/a	n/a
35	CBX3	chr15:35465629-35466364	K562	blood:	n/a	n/a
36	FOSL1	chr15:35465737-35466002	K562	blood:	n/a	chr15:35465822-35465833

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35464572..35466280-chr15:35519004..35521985,2	K562	blood:
2	chr15:35444713..35447231-chr15:35465394..35466965,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259336	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10152519	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152995	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1017553	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10444813	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11073086	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11854262	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11854457	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11855339	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11857698	0.88[EUR][1000 genomes]
rs12232307	0.85[EUR][1000 genomes]
rs13313465	0.85[EUR][1000 genomes]
rs1380089	0.97[ASN][1000 genomes]
rs1458885	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960534	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16960582	0.84[EUR][1000 genomes]
rs16960587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16960605	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1903077	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2168959	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4597271	0.85[ASW][hapmap];0.85[YRI][hapmap]
rs55662900	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55763113	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56225597	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62006770	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62006771	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67156387	0.86[EUR][1000 genomes]
rs73389201	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038846	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs967370	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944276	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9972525	0.81[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35459200-35467800	Weak transcription	Fetal Kidney	kidney
3	chr15:35463200-35466200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:35463400-35467600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:35465200-35466000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:35465200-35466000	Enhancers	NHLF	lung
7	chr15:35465400-35466000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:35465400-35466000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:35465400-35466200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:35465400-35466200	Enhancers	HepG2	liver
11	chr15:35465400-35466200	Flanking Active TSS	K562	blood
12	chr15:35465600-35466200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:35465600-35466200	Enhancers	NHDF-Ad	bronchial

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