Variant report

Variant	rs11854457
Chromosome Location	chr15:35448970-35448971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35447976..35450872-chr15:35455047..35457102,2	K562	blood:
2	chr15:35447561..35449886-chr15:35458594..35460900,2	MCF-7	breast:
3	chr15:35442116..35444661-chr15:35448052..35450129,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10152519	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10152995	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10444813	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11073085	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11073086	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11854262	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11855339	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857698	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12232307	0.83[EUR][1000 genomes]
rs13313465	0.83[EUR][1000 genomes]
rs1458885	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16960534	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16960582	0.82[EUR][1000 genomes]
rs16960587	0.87[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1903077	0.83[ASN][1000 genomes]
rs2168959	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4923911	0.97[ASN][1000 genomes]
rs4923912	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55662900	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56225597	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62006770	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62006771	0.91[EUR][1000 genomes]
rs6495758	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67156387	0.84[EUR][1000 genomes]
rs73389201	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs967370	0.92[EUR][1000 genomes]
rs9944276	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9972525	0.81[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11854457	KLF13	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35431200-35451800	Weak transcription	Aorta	Aorta

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