Variant report

Variant	rs8038846
Chromosome Location	chr15:35495074-35495075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10152519	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10152995	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1017553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10444813	0.89[ASN][1000 genomes]
rs1380089	0.89[ASN][1000 genomes]
rs1458885	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16960587	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16960605	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1903077	0.80[ASN][1000 genomes]
rs55662900	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55763113	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56225597	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62006770	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62006771	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6495758	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73389201	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs967370	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1486	chr15:35494248-35536549	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35484200-35502000	Weak transcription	Left Ventricle	heart
2	chr15:35489000-35504600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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