Variant report

Variant	rs11635872
Chromosome Location	chr15:35474412-35474413
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114546.1-10	chr15:35474352-35474836	NONHSAT041624

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10444865	0.90[ASN][1000 genomes]
rs11632681	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12232307	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12439483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12591832	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12900262	0.82[ASN][1000 genomes]
rs12906317	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12911934	1.00[JPT][hapmap]
rs12917029	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13313465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1380089	0.85[EUR][1000 genomes]
rs1458883	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16960582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16960585	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1903077	0.82[EUR][1000 genomes]
rs2166157	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28448413	0.81[ASN][1000 genomes]
rs4597271	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4924584	0.81[ASN][1000 genomes]
rs4924607	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59469657	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59766603	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67156387	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8024405	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8026065	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8027994	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8031065	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9972525	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35473200-35475000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr15:35473200-35475200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:35473200-35475600	Enhancers	GM12878-XiMat	blood
4	chr15:35473200-35476000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr15:35473200-35476000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr15:35473200-35477000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:35473200-35478000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:35473400-35475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:35473600-35476600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:35473800-35477600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr15:35474000-35475000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:35474000-35475000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:35474000-35475000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:35474000-35483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:35474200-35475200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:35474200-35478600	Weak transcription	Rectal Smooth Muscle	rectum

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