Variant report

Variant	rs28448413
Chromosome Location	chr15:35459269-35459270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10444865	0.85[ASN][1000 genomes]
rs11632681	0.87[ASN][1000 genomes]
rs11635872	0.81[ASN][1000 genomes]
rs12232307	0.87[ASN][1000 genomes]
rs12439483	0.87[ASN][1000 genomes]
rs12591832	0.85[ASN][1000 genomes]
rs12591917	0.82[ASN][1000 genomes]
rs12906317	0.86[ASN][1000 genomes]
rs12917029	0.86[ASN][1000 genomes]
rs13313465	0.87[ASN][1000 genomes]
rs1458883	0.86[ASN][1000 genomes]
rs16960582	0.87[ASN][1000 genomes]
rs16960585	0.87[ASN][1000 genomes]
rs2166157	0.86[ASN][1000 genomes]
rs28517435	0.82[ASN][1000 genomes]
rs4597271	0.85[ASN][1000 genomes]
rs4924584	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4924607	0.87[ASN][1000 genomes]
rs59469657	0.87[ASN][1000 genomes]
rs59766603	0.87[ASN][1000 genomes]
rs67156387	0.87[ASN][1000 genomes]
rs8024405	0.87[ASN][1000 genomes]
rs8026065	0.86[ASN][1000 genomes]
rs8027994	0.86[ASN][1000 genomes]
rs8031065	0.85[ASN][1000 genomes]
rs9972525	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35456400-35460000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:35457800-35460200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:35458000-35460000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:35458400-35460200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:35459200-35459600	Flanking Active TSS	K562	blood
7	chr15:35459200-35460600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:35459200-35462200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:35459200-35467800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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