Variant report

Variant	rs62006772
Chromosome Location	chr15:35468860-35468861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10444865	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11632681	0.85[ASN][1000 genomes]
rs12232307	0.85[ASN][1000 genomes]
rs12439483	0.85[ASN][1000 genomes]
rs12591832	0.83[ASN][1000 genomes]
rs12906317	0.84[ASN][1000 genomes]
rs12917029	0.84[ASN][1000 genomes]
rs13313465	0.85[ASN][1000 genomes]
rs1458883	0.84[ASN][1000 genomes]
rs16960582	0.85[ASN][1000 genomes]
rs16960585	0.85[ASN][1000 genomes]
rs2166157	0.83[ASN][1000 genomes]
rs4597271	0.83[ASN][1000 genomes]
rs4924607	0.85[ASN][1000 genomes]
rs59469657	0.85[ASN][1000 genomes]
rs59766603	0.85[ASN][1000 genomes]
rs67156387	0.85[ASN][1000 genomes]
rs8024405	0.85[ASN][1000 genomes]
rs8026065	0.84[ASN][1000 genomes]
rs8027994	0.84[ASN][1000 genomes]
rs8031065	0.83[ASN][1000 genomes]
rs9972525	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv904073	chr15:35467096-35686267	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35458800-35473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35466000-35473400	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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