Variant report

Variant	rs12916765
Chromosome Location	chr15:74653640-74653641
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12440952	0.84[EUR][1000 genomes]
rs12914852	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277602	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2930304	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2959003	0.92[EUR][1000 genomes]
rs2959004	0.82[ASN][1000 genomes]
rs2959011	0.84[EUR][1000 genomes]
rs34578565	0.81[AFR][1000 genomes]
rs4077581	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4077582	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56339065	0.92[AFR][1000 genomes]
rs7173655	0.94[EUR][1000 genomes]
rs751527	0.82[EUR][1000 genomes]
rs8031121	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8031424	0.89[ASN][1000 genomes]
rs8039847	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs900798	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9806234	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv984091	chr15:74640375-74659005	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv18862	chr15:74642778-74659579	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv569972	chr15:74644945-74656553	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv569973	chr15:74648060-74656553	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74642200-74653800	Weak transcription	Ovary	ovary
3	chr15:74644200-74656800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74647200-74654400	Enhancers	Placenta	Placenta
5	chr15:74648800-74656800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:74651000-74657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74651600-74656200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:74652200-74656600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:74652200-74656600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:74652200-74656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:74652400-74654200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr15:74652600-74656600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:74653200-74654200	Enhancers	Hela-S3	cervix
14	chr15:74653600-74654000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:74653600-74654400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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