Variant report

Variant	rs7173655
Chromosome Location	chr15:74632362-74632363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr15:74632285-74632970	MCF-7	breast:	n/a	n/a
2	MAX	chr15:74632336-74632957	Hela-S3	cervix:	n/a	n/a
3	BRCA1	chr15:74632312-74632859	Hela-S3	cervix:	n/a	n/a
4	NR2F2	chr15:74632350-74632915	MCF-7	breast:	n/a	n/a
5	USF2	chr15:74632308-74632913	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr15:74632317-74632956	MCF-7	breast:	n/a	chr15:74632616-74632627
7	ELK4	chr15:74632322-74632829	Hela-S3	cervix:	n/a	n/a
8	GATA3	chr15:74632331-74633090	MCF-7	breast:	n/a	n/a
9	CEBPB	chr15:74632213-74633031	Hela-S3	cervix:	n/a	chr15:74632616-74632627
10	SMC3	chr15:74632345-74633040	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr15:74632349-74632877	Hela-S3	cervix:	n/a	n/a
12	MAX	chr15:74632250-74632784	NB4	blood:	n/a	n/a
13	GTF2F1	chr15:74632220-74633008	Hela-S3	cervix:	n/a	n/a
14	GATA3	chr15:74632243-74633085	MCF-7	breast:	n/a	n/a
15	SMARCC1	chr15:74632275-74633352	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
CYP11A1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11638442	0.87[AFR][1000 genomes]
rs12440952	0.86[EUR][1000 genomes]
rs12914852	0.82[EUR][1000 genomes]
rs12916765	0.94[EUR][1000 genomes]
rs12917295	0.81[AFR][1000 genomes]
rs1564782	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1564783	0.81[EUR][1000 genomes]
rs2277601	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2277602	0.84[EUR][1000 genomes]
rs2277605	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2277606	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2279356	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2930304	0.82[EUR][1000 genomes]
rs2959003	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2959004	0.80[EUR][1000 genomes]
rs2959011	0.86[EUR][1000 genomes]
rs4077581	0.81[EUR][1000 genomes]
rs4077582	0.81[EUR][1000 genomes]
rs751527	0.84[EUR][1000 genomes]
rs8031121	0.89[EUR][1000 genomes]
rs8039847	0.89[EUR][1000 genomes]
rs900798	0.97[EUR][1000 genomes]
rs900802	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74622600-74638600	Weak transcription	Spleen	Spleen
3	chr15:74628000-74642200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:74629400-74632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:74629600-74632400	Weak transcription	NH-A	brain
6	chr15:74631400-74632800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:74631600-74633200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:74631600-74633200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr15:74631800-74632400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:74631800-74632400	Enhancers	Esophagus	oesophagus
11	chr15:74631800-74632400	Enhancers	Lung	lung
12	chr15:74631800-74633000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:74631800-74633200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:74631800-74633400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:74631800-74633400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr15:74632000-74633000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:74632000-74633000	Enhancers	NHDF-Ad	bronchial
18	chr15:74632000-74633200	Flanking Active TSS	Hela-S3	cervix
19	chr15:74632000-74633600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:74632000-74633600	Enhancers	HSMMtube	muscle
21	chr15:74632200-74632600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:74632200-74632800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:74632200-74632800	Enhancers	Adipose Nuclei	Adipose
24	chr15:74632200-74632800	Enhancers	HSMM	muscle
25	chr15:74632200-74633000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:74632200-74633000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:74632200-74633000	Enhancers	NHEK	skin
28	chr15:74632200-74633000	Enhancers	Osteobl	bone
29	chr15:74632200-74633200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:74632200-74633200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:74632200-74634200	Enhancers	Placenta	Placenta

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